View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17013_high_14 (Length: 304)

Name: NF17013_high_14
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17013_high_14
NF17013_high_14
[»] chr8 (1 HSPs)
chr8 (1-288)||(40269643-40269930)


Alignment Details
Target: chr8 (Bit Score: 280; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 288
Target Start/End: Complemental strand, 40269930 - 40269643
Alignment:
Q  1 gggtacaattcaacatctgatgaagatagagacgaaaggtacaaactatatattaacactagtgtttttggattttggatttcacttggttgtcattgac 100  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  40269930 gggtataattcaacatctgatgaagatagagacgaaaggtacaaactatatattaacactagtgtttttagattttggatttcacttggttgtcattgac 40269831  T
Q  101 ttttggcgccattagtgctttaaccttttcgtcttgtgcttataattttgttaatgatttacgaagaagaaaaaatattaacatcatttgattaataaat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40269830 ttttggcgccattagtgctttaaccttttcgtcttgtgcttataattttgttaatgatttacgaagaagaaaaaatattaacatcatttgattaataaat 40269731  T
Q  201 aacagcgatctattttgaaacatatagttctgcattgcaattatacgagtcatgctcacattttgttccttaattttagtgatgaatc 288  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40269730 aacagcgatctattttgaaacatatagttctgcattgcaattatacgagtcatgctcacattttgttccttaattttagtgatgaatc 40269643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University