View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17013_high_16 (Length: 252)

Name: NF17013_high_16
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17013_high_16
NF17013_high_16
[»] chr6 (7 HSPs)
chr6 (13-171)||(14326231-14326389)
chr6 (13-171)||(14419241-14419399)
chr6 (49-136)||(16269513-16269600)
chr6 (198-252)||(14326416-14326470)
chr6 (198-252)||(14419426-14419480)
chr6 (62-127)||(28931016-28931083)
chr6 (82-139)||(22299804-22299861)
[»] chr3 (14 HSPs)
chr3 (13-171)||(23561006-23561163)
chr3 (26-127)||(12060749-12060850)
chr3 (49-136)||(48866275-48866362)
chr3 (198-252)||(23560925-23560979)
chr3 (54-136)||(49334233-49334315)
chr3 (72-136)||(39287606-39287670)
chr3 (49-153)||(47854620-47854724)
chr3 (61-112)||(51825541-51825592)
chr3 (55-122)||(52293432-52293499)
chr3 (62-112)||(42633806-42633856)
chr3 (67-112)||(2124180-2124225)
chr3 (62-111)||(41387354-41387403)
chr3 (62-107)||(42632852-42632897)
chr3 (55-136)||(48825952-48826033)
[»] chr1 (16 HSPs)
chr1 (49-136)||(2971833-2971920)
chr1 (47-143)||(40812500-40812595)
chr1 (50-135)||(21278114-21278199)
chr1 (55-136)||(35684098-35684179)
chr1 (67-136)||(34531815-34531884)
chr1 (55-136)||(48973338-48973419)
chr1 (62-136)||(25889388-25889462)
chr1 (67-112)||(25786119-25786164)
chr1 (67-112)||(52181225-52181270)
chr1 (55-151)||(48934990-48935086)
chr1 (62-112)||(47411368-47411418)
chr1 (82-139)||(13641415-13641472)
chr1 (67-112)||(31859741-31859786)
chr1 (13-53)||(3978122-3978162)
chr1 (61-101)||(13567318-13567358)
chr1 (67-107)||(25787089-25787129)
[»] chr8 (4 HSPs)
chr8 (26-127)||(8096469-8096570)
chr8 (48-135)||(36071273-36071360)
chr8 (67-112)||(27750541-27750586)
chr8 (67-112)||(38589971-38590016)
[»] chr2 (7 HSPs)
chr2 (13-143)||(14510417-14510547)
chr2 (55-136)||(33836909-33836990)
chr2 (51-136)||(42246726-42246811)
chr2 (61-128)||(6208969-6209036)
chr2 (55-136)||(2305680-2305761)
chr2 (55-136)||(41312640-41312721)
chr2 (55-122)||(3665364-3665431)
[»] chr7 (12 HSPs)
chr7 (49-136)||(33458443-33458530)
chr7 (62-136)||(30223872-30223946)
chr7 (61-112)||(35128112-35128163)
chr7 (62-136)||(30222792-30222866)
chr7 (61-122)||(41126385-41126446)
chr7 (68-112)||(22060615-22060659)
chr7 (56-136)||(36673731-36673811)
chr7 (62-112)||(22061715-22061765)
chr7 (61-136)||(7146924-7147000)
chr7 (70-166)||(41618364-41618460)
chr7 (55-143)||(47163291-47163379)
chr7 (61-89)||(48671222-48671250)
[»] chr5 (5 HSPs)
chr5 (67-136)||(40059221-40059290)
chr5 (47-136)||(26911290-26911379)
chr5 (61-112)||(5062106-5062157)
chr5 (69-136)||(20988844-20988911)
chr5 (55-100)||(15613644-15613689)
[»] chr4 (14 HSPs)
chr4 (53-136)||(40146528-40146611)
chr4 (62-151)||(29834313-29834402)
chr4 (55-136)||(30671960-30672041)
chr4 (61-112)||(1273353-1273404)
chr4 (46-136)||(4373508-4373598)
chr4 (55-166)||(15446532-15446643)
chr4 (62-136)||(29833518-29833592)
chr4 (62-143)||(47606488-47606570)
chr4 (51-136)||(48206295-48206380)
chr4 (61-112)||(33377284-33377335)
chr4 (61-112)||(44128254-44128305)
chr4 (61-112)||(55953772-55953823)
chr4 (67-136)||(23153157-23153226)
chr4 (68-136)||(526614-526682)
[»] scaffold0178 (1 HSPs)
scaffold0178 (50-136)||(2160-2246)
[»] scaffold0177 (1 HSPs)
scaffold0177 (62-136)||(1901-1975)
[»] scaffold0002 (1 HSPs)
scaffold0002 (56-100)||(458392-458436)


Alignment Details
Target: chr6 (Bit Score: 131; Significance: 5e-68; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 14326231 - 14326389
Alignment:
Q  13 ataattcttcagtcgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14326231 ataattcttctatcgtttactattgtggtcctttccgttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcaca 14326330  T
Q  113 aatatacaatgaactaacaacataggatcatatttatttctattgaatttcttactaat 171  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  14326331 aatatacaatgaactcacaacataggatcatattcatttctattgaatttcttactaat 14326389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 13 - 171
Target Start/End: Original strand, 14419241 - 14419399
Alignment:
Q  13 ataattcttcagtcgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||||  ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||    
T  14419241 ataattcttctatcgtttactattgtggtcctttccgttaacctcttatccacttgtcatttaagattggtgatcaatggctgaatttagaaagcgcaca 14419340  T
Q  113 aatatacaatgaactaacaacataggatcatatttatttctattgaatttcttactaat 171  Q
    ||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  14419341 aatatacaatgaactcacaacataggatcatattcatttctattgaatttcttactaat 14419399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Complemental strand, 16269600 - 16269513
Alignment:
Q  49 gttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||||||||| ||| ||||||||||||||||||| || |||||||||||||| |||||| |||||||||||  ||||||||    
T  16269600 gttaaccccttatccacgtgtaatttaagattggtgatcaagggttggatttagaaagcgcacaaacatacaatgaacgcacaacata 16269513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 14326416 - 14326470
Alignment:
Q  198 ttatcttctcatcccctgttccctttgtcctcttctttcttcctccaatcttgtt 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14326416 ttatcttctcatcccgtgttccctttgtcctcttctttcttcctccaatcttgtt 14326470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 198 - 252
Target Start/End: Original strand, 14419426 - 14419480
Alignment:
Q  198 ttatcttctcatcccctgttccctttgtcctcttctttcttcctccaatcttgtt 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  14419426 ttatcttctcatcccgtgttccctttgtcctcttctttcttcctccaatcttgtt 14419480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 62 - 127
Target Start/End: Complemental strand, 28931083 - 28931016
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcac--acaaatatacaatgaact 127  Q
    |||| ||||| ||||||||| ||||||| || |||||||| |||||||  ||||||||||||||||||    
T  28931083 ccacatgtcacttaagattgatgatcaagggttggatttaaaaagcactcacaaatatacaatgaact 28931016  T

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Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Complemental strand, 22299861 - 22299804
Alignment:
Q  82 gtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacatagga 139  Q
    ||||||||  |||||||||||| ||| |||| |||||||||||||| | |||||||||    
T  22299861 gtgatcaagagctggatttagagagcgcacagatatacaatgaactcaaaacatagga 22299804  T

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Target: chr3 (Bit Score: 107; Significance: 1e-53; HSPs: 14)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 13 - 171
Target Start/End: Complemental strand, 23561163 - 23561006
Alignment:
Q  13 ataattcttcagtcgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||||||||| | |||||||||||||| ||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||| |||||||||||| |||    
T  23561163 ataattcttctgacgtttactattgtg-tcctttccgttaaccccttgtccacatgtcatttaagattggtgatcaatgactgaatttagaaagcataca 23561065  T
Q  113 aatatacaatgaactaacaacataggatcatatttatttctattgaatttcttactaat 171  Q
     ||||| |||||||| |||||||||||||||||| ||||||||||||||||||||||||    
T  23561064 gatatataatgaacttacaacataggatcatattcatttctattgaatttcttactaat 23561006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 26 - 127
Target Start/End: Original strand, 12060749 - 12060850
Alignment:
Q  26 cgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaa 125  Q
    ||||||||||| ||||||| ||| | |||  | ||||||| ||||| ||||||||||||||||||||||| ||||||||||||| |||||||||||| ||    
T  12060749 cgtttactattttggtcctctccatcaacttcatatccacatgtcacttaagattggtgatcaatggctgaatttagaaagcacgcaaatatacaataaa 12060848  T
Q  126 ct 127  Q
    ||    
T  12060849 ct 12060850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 48866275 - 48866362
Alignment:
Q  49 gttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||| | ||| |||||||| |||||| ||||||| | ||||||||||||||| ||||||||||||||| ||| ||||||||    
T  48866275 gttaaccccttgttcacgtgtcattttagattgatgatcaaggactggatttagaaagcgcacaaatatacaatggactcacaacata 48866362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 198 - 252
Target Start/End: Complemental strand, 23560979 - 23560925
Alignment:
Q  198 ttatcttctcatcccctgttccctttgtcctcttctttcttcctccaatcttgtt 252  Q
    ||||||||||||||| |||||||||||||||||||||||||||||| ||||||||    
T  23560979 ttatcttctcatcccgtgttccctttgtcctcttctttcttcctcctatcttgtt 23560925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 54 - 136
Target Start/End: Complemental strand, 49334315 - 49334233
Alignment:
Q  54 ccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||| ||||| | |||||||| |||||||||  |||||||||||| || ||| ||||||||||||||||||| ||||||||    
T  49334315 ccccttgtccacatttcatttaatattggtgattgatggctggatttggacagcgcacaaatatacaatgaactcacaacata 49334233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 39287606 - 39287670
Alignment:
Q  72 tttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||||||||||||||| |||| |||||  |||| ||||||||||||||||  || ||||||||    
T  39287606 tttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 39287670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 49 - 153
Target Start/End: Original strand, 47854620 - 47854724
Alignment:
Q  49 gttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcatattta 148  Q
    ||||| ||||| ||||| |||||||||||||| |||||||| |  | |||||  |||| || ||| ||||||||| ||| |||||||| |||||| | ||    
T  47854620 gttaaacccttgtccacatgtcatttaagatttgtgatcaaggattagatttgaaaagtacgcaagtatacaatggactcacaacatatgatcatttcta 47854719  T
Q  149 tttct 153  Q
    |||||    
T  47854720 tttct 47854724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 51825592 - 51825541
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||| |||||||||||||||||||| || ||||| ||||||||||    
T  51825592 tccacgtgtcagttaagattggtgatcaatggttgaatttaaaaagcacaca 51825541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Complemental strand, 52293499 - 52293432
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaat 122  Q
    ||||| ||||| ||||||||||||||||||||||| ||||  ||||  |||| |||||| ||||||||    
T  52293499 cccttgtccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaat 52293432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 42633856 - 42633806
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||| ||||||||||||||||| ||||| || |||||||| ||||||||||    
T  42633856 ccacatgtcatttaagattggtaatcaacggttggatttaaaaagcacaca 42633806  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 2124180 - 2124225
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||||||||||||| |||||||| || |||||||| ||||||||||    
T  2124180 tgtcatttaagattagtgatcaacggttggatttaaaaagcacaca 2124225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 111
Target Start/End: Complemental strand, 41387403 - 41387354
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacac 111  Q
    |||| |||||||||| |||||||||||| || |||||||| |||||||||    
T  41387403 ccacatgtcatttaaaattggtgatcaacggttggatttaaaaagcacac 41387354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 62 - 107
Target Start/End: Original strand, 42632852 - 42632897
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagc 107  Q
    |||| ||||||||||||||||||||||| || |||||||| |||||    
T  42632852 ccacgtgtcatttaagattggtgatcaacggttggatttaaaaagc 42632897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 48825952 - 48826033
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| ||||||||||||||||||||||| || | | |||  |||| |||||| |||||||||  || ||||||||    
T  48825952 cccttgtccacatgtcatttaagattggtgatcaagggttaggtttgaaaagtacacaagtatacaatgggctcacaacata 48826033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 64; Significance: 4e-28; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 2971833 - 2971920
Alignment:
Q  49 gttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||| ||||| |||||||||||||||| |||||| |||||||||||||||||||||||||||| |||||||| ||||||||    
T  2971833 gttaaccccttgtccacgtgtcatttaagattggcgatcaagggctggatttagaaagcacacaaatataaaatgaactcacaacata 2971920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 47 - 143
Target Start/End: Complemental strand, 40812595 - 40812500
Alignment:
Q  47 ccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcat 143  Q
    |||||||||  || ||||| ||||| ||||||| |||||||||| | |||||||||||||||||||||||||||||||||| ||||||||| |||||    
T  40812595 ccgttaaccttttgtccacatgtcagttaagat-ggtgatcaattgttggatttagaaagcacacaaatatacaatgaactcacaacatagaatcat 40812500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 50 - 135
Target Start/End: Complemental strand, 21278199 - 21278114
Alignment:
Q  50 ttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacat 135  Q
    ||||||| |||||||| ||||||||||||||||||||||| | ||| |||||||  || |||||||||||||| |||| |||||||    
T  21278199 ttaaccctttatccacgtgtcatttaagattggtgatcaaagactgaatttagagggcgcacaaatatacaataaactcacaacat 21278114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 35684179 - 35684098
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| |||||||||||||||| |||||| |||| |||||| |||| |||||| |||||||||| || ||||||||    
T  35684179 cccttgtccacatgtcatttaagattggagatcaagggctagatttaaaaagtacacaagtatacaatgagctcacaacata 35684098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 67 - 136
Target Start/End: Original strand, 34531815 - 34531884
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||||||||||||||| |||| |||||  |||| ||||||||||||||||  || ||||||||    
T  34531815 tgtcatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 34531884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 48973338 - 48973419
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| ||||||||||||||||||||||| |||| |||||  |||| |||||| |||||||||  || ||||||||    
T  48973338 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 48973419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 25889462 - 25889388
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| ||||||||||||||||||||||| |||| |||||  |||  |||||| ||||||||| ||| ||||||||    
T  25889462 ccacatgtcatttaagattggtgatcaagggctagatttgaaaaatacacaagtatacaatggactcacaacata 25889388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 25786119 - 25786164
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||    
T  25786119 tgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 25786164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 52181270 - 52181225
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||||||||||||||||| || |||||||| ||||||||||    
T  52181270 tgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 52181225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 55 - 151
Target Start/End: Complemental strand, 48935086 - 48934990
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcatatttattt 151  Q
    ||||| ||||| | ||||||||||||| ||||||| |||| |||||  |||| |||||| |||||||||  || ||||||||  ||||| |||||||    
T  48935086 cccttgtccacatatcatttaagattgatgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttttattt 48934990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 47411418 - 47411368
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||| ||||||||||||||||||||||| || || ||||| ||||||||||    
T  47411418 ccacatgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 47411368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 82 - 139
Target Start/End: Original strand, 13641415 - 13641472
Alignment:
Q  82 gtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacatagga 139  Q
    ||||||||  |||||||||||| ||| |||| |||||||||||||| | |||||||||    
T  13641415 gtgatcaagagctggatttagagagcgcacagatatacaatgaactcaaaacatagga 13641472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 31859741 - 31859786
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||| |||| |||||||||||||||||||| ||| ||||||    
T  31859741 tgtcatttaggatttgtgatcaatggctggatttaaaaaacacaca 31859786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 13 - 53
Target Start/End: Original strand, 3978122 - 3978162
Alignment:
Q  13 ataattcttcagtcgtttactattgtggtcctttccgttaa 53  Q
    |||||||||| ||||||||||||| ||||||| ||||||||    
T  3978122 ataattcttctgtcgtttactattttggtcctctccgttaa 3978162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 101
Target Start/End: Original strand, 13567318 - 13567358
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggattta 101  Q
    ||||||||||||||| |||| ||||||||| ||||||||||    
T  13567318 tccacttgtcatttaggatttgtgatcaatagctggattta 13567358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 107
Target Start/End: Complemental strand, 25787129 - 25787089
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagc 107  Q
    ||||||||||||||||||||||| || |||||||| |||||    
T  25787129 tgtcatttaagattggtgatcaacggttggatttaaaaagc 25787089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 26 - 127
Target Start/End: Complemental strand, 8096570 - 8096469
Alignment:
Q  26 cgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaa 125  Q
    ||||||||||| ||||||| ||||| ||| || | | ||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||    
T  8096570 cgtttactattttggtcctctccgtcaactccatgttcacatgtcatttaagattggtgatcaatggctggatttagaaagcacgcaaatatacaataaa 8096471  T
Q  126 ct 127  Q
    ||    
T  8096470 ct 8096469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 48 - 135
Target Start/End: Complemental strand, 36071360 - 36071273
Alignment:
Q  48 cgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacat 135  Q
    ||||||||| |||||||| ||| |||||| |||||||||||| |||||||||||||  || |||||||||||||| | || |||||||    
T  36071360 cgttaaccctttatccacgtgttatttaaaattggtgatcaagggctggatttagagggcgcacaaatatacaataacctcacaacat 36071273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Complemental strand, 27750586 - 27750541
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||||||||||||| || |||||||| ||||||||||    
T  27750586 tgtcagttaagattggtgatcaacggttggatttaaaaagcacaca 27750541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 112
Target Start/End: Original strand, 38589971 - 38590016
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||||||||||||||||||||| || || ||||| ||||||||||    
T  38589971 tgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 38590016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 59; Significance: 4e-25; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 13 - 143
Target Start/End: Complemental strand, 14510547 - 14510417
Alignment:
Q  13 ataattcttcagtcgtttactattgtggtcctttccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||| ||||| | ||||||||||| | ||| | | |||||||||| | || |  ||||||||||||||| ||||||||| ||||||||||||||||||||    
T  14510547 ataactcttctgccgtttactattttagtcatcttcgttaaccccctgtctatgtgtcatttaagattgatgatcaatgactggatttagaaagcacaca 14510448  T
Q  113 aatatacaatgaactaacaacataggatcat 143  Q
    ||||||||||| ||| |||||||| ||||||    
T  14510447 aatatacaatgcactcacaacatatgatcat 14510417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 33836909 - 33836990
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| ||||||||||||||||||||||| |||| |||||  |||| |||||| |||||||||  || ||||||||    
T  33836909 cccttgtccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 33836990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 42246726 - 42246811
Alignment:
Q  51 taaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||| |||||||| | ||| ||||||| | ||||||| || |||||||||||||| |||| |||||||| ||||| ||||||||    
T  42246726 taacccattatccacgtatcacttaagatggatgatcaagggttggatttagaaagcgcacatatatacaacgaactcacaacata 42246811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 128
Target Start/End: Complemental strand, 6209036 - 6208969
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaacta 128  Q
    ||||| ||||||||||||||||||||||| || | |||||| |||| |||||| ||||||||| ||||    
T  6209036 tccacatgtcatttaagattggtgatcaagggttagatttaaaaagtacacaagtatacaatggacta 6208969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 2305680 - 2305761
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| |||||||||||||||| |||||| |||| |||||  |||| |||||| |||||||||  || ||||||||    
T  2305680 cccttgtccacatgtcatttaagattggagatcaagggctagatttgaaaagtacacaagtatacaatgggctcacaacata 2305761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 136
Target Start/End: Original strand, 41312640 - 41312721
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| ||||||||||||||||||||||| || | |||||  |||| |||||  ||||||||| ||| ||||||||    
T  41312640 cccttgtccacatgtcatttaagattggtgatcaagggttagatttgaaaagtacacaggtatacaatggactcacaacata 41312721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 55 - 122
Target Start/End: Original strand, 3665364 - 3665431
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaat 122  Q
    ||||| ||||| ||||||||||||||||||||||| | || |||||  |||| |||||| ||||||||    
T  3665364 cccttgtccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaat 3665431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 49 - 136
Target Start/End: Original strand, 33458443 - 33458530
Alignment:
Q  49 gttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||| ||||| |||||||||||||| |||||||| |||||||||||| |||| ||||||||||||||| ||| ||||||||    
T  33458443 gttaaccccttgtccacgtgtcatttaagattagtgatcaagggctggatttagtaagcgcacaaatatacaatggacttacaacata 33458530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 62 - 136
Target Start/End: Complemental strand, 30223946 - 30223872
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| ||||||||||||||||||||||| |||| |||||  |||| |||||| ||||||||| ||| ||||||||    
T  30223946 ccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacata 30223872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 35128163 - 35128112
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  35128163 tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 35128112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 30222792 - 30222866
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| ||||||||||||||||||||||| | || |||||  |||| |||||| ||||||||| ||| ||||||||    
T  30222792 ccacatgtcatttaagattggtgatcaaggactagatttgaaaagtacacaagtatacaatggactcacaacata 30222866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 61 - 122
Target Start/End: Original strand, 41126385 - 41126446
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaat 122  Q
    ||||| ||||||||||||||||||||||| |||| |||||  |||| |||||| ||||||||    
T  41126385 tccacatgtcatttaagattggtgatcaagggctagatttgaaaagtacacaagtatacaat 41126446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 68 - 112
Target Start/End: Original strand, 22060615 - 22060659
Alignment:
Q  68 gtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||||||||||||||||||||| || |||||||| ||||||||||    
T  22060615 gtcatttaagattggtgatcaacggttggatttaaaaagcacaca 22060659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 56 - 136
Target Start/End: Complemental strand, 36673811 - 36673731
Alignment:
Q  56 ccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| ||||| ||||||||||||||||||||||| |||| | |||  |||| |||||| |||||||||  || ||||||||    
T  36673811 ccttgtccacatgtcatttaagattggtgatcaagggctaggtttgaaaagtacacaagtatacaatgggctcacaacata 36673731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 112
Target Start/End: Complemental strand, 22061765 - 22061715
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    |||| |||||||||||||||| |||||| || |||||||| ||||||||||    
T  22061765 ccacgtgtcatttaagattggggatcaacggttggatttaaaaagcacaca 22061715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 136
Target Start/End: Original strand, 7146924 - 7147000
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca-aatatacaatgaactaacaacata 136  Q
    ||||| ||||||||||||||| |||| || || |||||||| |||||||||| |  |||| ||||||| ||||||||    
T  7146924 tccacatgtcatttaagattgatgatgaacggttggatttaaaaagcacacatagcataccatgaacttacaacata 7147000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 70 - 166
Target Start/End: Complemental strand, 41618460 - 41618364
Alignment:
Q  70 catttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcatatttatttctattgaatttctta 166  Q
    |||||||||||||||||||| || | |||||  |||| |||||| |||||||||  || ||||||||  ||||| | ||||| | |||| |||||||    
T  41618460 catttaagattggtgatcaagggttagatttgaaaagtacacaagtatacaatgggctcacaacatataatcatttctatttttcttgattttctta 41618364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 143
Target Start/End: Original strand, 47163291 - 47163379
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcat 143  Q
    ||||| ||||| |||||||||||||| |||||||| |  | |||||  |||| || ||| ||||||||| ||| |||||||| ||||||    
T  47163291 cccttgtccacatgtcatttaagatttgtgatcaaagattagatttgaaaagtacgcaagtatacaatggactcacaacatatgatcat 47163379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 61 - 89
Target Start/End: Original strand, 48671222 - 48671250
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaa 89  Q
    |||||||||||||||||||||||||||||    
T  48671222 tccacttgtcatttaagattggtgatcaa 48671250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 46; Significance: 2e-17; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 40059290 - 40059221
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||||||| |||||||  |||||||||||||||| |||| |||||||||||||| ||||||||    
T  40059290 tgtcatttaagattgatgatcaagagctggatttagaaagcgcacacatatacaatgaactcacaacata 40059221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 136
Target Start/End: Original strand, 26911290 - 26911379
Alignment:
Q  47 ccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||||||| |||||||| ||||| |||||||   ||||||| || |||||||||||||| |||| ||||| ||||||||  |||||||    
T  26911290 ccgttaacccattatccacgtgtcacttaagatgaatgatcaagggttggatttagaaagcgcacatatatagaatgaactcgcaacata 26911379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 5062157 - 5062106
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||||| |||| |||||||||||||||||||| ||| ||||||    
T  5062157 tccacatgtcatttaggatttgtgatcaatggctggatttaaaaaacacaca 5062106  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 69 - 136
Target Start/End: Original strand, 20988844 - 20988911
Alignment:
Q  69 tcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||||||||||||||| |||| |||||  |||| |||||| |||||||||  || ||||||||    
T  20988844 tcatttaagattggtgatcaaaggctagatttgaaaagtacacaagtatacaatgggctcacaacata 20988911  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 55 - 100
Target Start/End: Original strand, 15613644 - 15613689
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggattt 100  Q
    ||||| ||||| |||||||||||||| ||||||||||||| |||||    
T  15613644 cccttgtccacatgtcatttaagatttgtgatcaatggctagattt 15613689  T

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Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 53 - 136
Target Start/End: Complemental strand, 40146611 - 40146528
Alignment:
Q  53 accccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||| ||||| ||||||||||| || |||||||| |||||||||||| |||| ||||||||||||||| ||  ||||||||    
T  40146611 accccttgtccacatgtcatttaagtttagtgatcaagggctggatttagcaagcgcacaaatatacaatggacgcacaacata 40146528  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 62 - 151
Target Start/End: Complemental strand, 29834402 - 29834313
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcatatttattt 151  Q
    |||| ||||||||||||||||||||||| ||||  ||||  |||| |||||| ||||||||| ||| ||||||||  ||||| |||||||    
T  29834402 ccacatgtcatttaagattggtgatcaagggctatatttgaaaagtacacaagtatacaatggactcacaacatataatcatttttattt 29834313  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 55 - 136
Target Start/End: Complemental strand, 30672041 - 30671960
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||| ||||| ||| ||||||||||||||||||| |||| |||||  |||| ||||||||||||||||  || ||||||||    
T  30672041 cccttgtccacatgttatttaagattggtgatcaagggctagatttgaaaagtacacaaatatacaatgggctcacaacata 30671960  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 1273404 - 1273353
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||||||||||||||||||| || |||||||| ||||||||||    
T  1273404 tccacgtgtcatttaagattggtgatcaacggttggatttaaaaagcacaca 1273353  T

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Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 46 - 136
Target Start/End: Original strand, 4373508 - 4373598
Alignment:
Q  46 tccgttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca-aatatacaatgaactaacaacata 136  Q
    |||||||||| ||| ||||| ||||||||| |||||||||| |||||||||||||  ||||||||||   ||||||||| ||| ||||||||    
T  4373508 tccgttaacctctt-tccacgtgtcatttaggattggtgattaatggctggatttgaaaagcacacatggtatacaatggactcacaacata 4373598  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 166
Target Start/End: Complemental strand, 15446643 - 15446532
Alignment:
Q  55 cccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacataggatcatatttatttcta 154  Q
    ||||| ||||| ||||||||||||||||||||||| || | |||||  |||| ||||||  ||||||||  || |||||||| |||||| | ||||| |     
T  15446643 cccttgtccacatgtcatttaagattggtgatcaagggtttgattttaaaagtacacaaccatacaatgggctcacaacatatgatcatttctatttttc 15446544  T
Q  155 ttgaatttctta 166  Q
    |||| |||||||    
T  15446543 ttgattttctta 15446532  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 29833518 - 29833592
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| ||||| ||||||||||||||||| |||| |||||  |||| |||||| ||||||||| ||| ||||||||    
T  29833518 ccacatgtcaattaagattggtgatcaagggctagatttgaaaagtacacaagtatacaatggactcacaacata 29833592  T

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Target: chr4; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 62 - 143
Target Start/End: Complemental strand, 47606570 - 47606488
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacac-aaatatacaatgaactaacaacataggatcat 143  Q
    |||| ||||| ||| ||||||||||||| || |||||||| ||||||||| |||| |||||| |||| |||||||| ||||||    
T  47606570 ccacgtgtcacttaggattggtgatcaagggttggatttaaaaagcacacaaaatttacaataaactcacaacatatgatcat 47606488  T

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Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 51 - 136
Target Start/End: Original strand, 48206295 - 48206380
Alignment:
Q  51 taaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||| |||||||| ||||| ||||||| | |||||||  | | |||||||||||| |||| |||||||||||| | ||||||||    
T  48206295 taacccattatccacatgtcacttaagatggatgatcaagagttagatttagaaagcgcacatatatacaatgaattcacaacata 48206380  T

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Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 33377335 - 33377284
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| |||| |||||||||||||||||| || |||||||| ||||||||||    
T  33377335 tccacgtgtcgtttaagattggtgatcaacggttggatttaaaaagcacaca 33377284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 44128305 - 44128254
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||| ||||||||||||||| || |||||||| ||||||||||    
T  44128305 tccacatgtcattcaagattggtgatcaacggttggatttaaaaagcacaca 44128254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 61 - 112
Target Start/End: Complemental strand, 55953823 - 55953772
Alignment:
Q  61 tccacttgtcatttaagattggtgatcaatggctggatttagaaagcacaca 112  Q
    ||||| ||||||||||||||||||||||| || || ||||| ||||||||||    
T  55953823 tccacgtgtcatttaagattggtgatcaacggttgaatttaaaaagcacaca 55953772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 67 - 136
Target Start/End: Complemental strand, 23153226 - 23153157
Alignment:
Q  67 tgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||||| ||||  ||||||| || |||||||  ||| ||||||| ||||||||||||| ||||||||    
T  23153226 tgtcatttaggattaatgatcaagggttggatttgaaaaacacacaattatacaatgaactcacaacata 23153157  T

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Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 68 - 136
Target Start/End: Complemental strand, 526682 - 526614
Alignment:
Q  68 gtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||||||||||||||||||||| ||||  ||||  |||| |||||| |||||||||  || ||||||||    
T  526682 gtcatttaagattggtgatcaagggctaaatttgaaaagtacacaagtatacaatgggctcacaacata 526614  T

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Target: scaffold0178 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 50 - 136
Target Start/End: Complemental strand, 2246 - 2160
Alignment:
Q  50 ttaaccccttatccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    ||||||| |||||||| ||||| ||||||| | ||||||| || |||||||||| ||| |||| |||||||||||||| | ||||||    
T  2246 ttaacccattatccacgtgtcacttaagatggatgatcaagggttggatttagagagcgcacatatatacaatgaactcaaaacata 2160  T

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Target: scaffold0177 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0177
Description:

Target: scaffold0177; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 62 - 136
Target Start/End: Original strand, 1901 - 1975
Alignment:
Q  62 ccacttgtcatttaagattggtgatcaatggctggatttagaaagcacacaaatatacaatgaactaacaacata 136  Q
    |||| |||||||||||||||  |||||| |||| |||||  |||| |||||| |||||||||| || ||||||||    
T  1901 ccacatgtcatttaagattgaagatcaagggctagatttgaaaagtacacaagtatacaatgagctcacaacata 1975  T

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Target: scaffold0002 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 56 - 100
Target Start/End: Complemental strand, 458436 - 458392
Alignment:
Q  56 ccttatccacttgtcatttaagattggtgatcaatggctggattt 100  Q
    |||| ||||| ||||||||||||||||||||||| |||| |||||    
T  458436 ccttgtccacatgtcatttaagattggtgatcaagggctagattt 458392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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