View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17013_high_2 (Length: 518)
Name: NF17013_high_2
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_high_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 421; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 421; E-Value: 0
Query Start/End: Original strand, 14 - 499
Target Start/End: Original strand, 48630916 - 48631400
Alignment:
| Q |
14 |
cacagacatttgtcacgttatgttgaccaaataagtaaattgacggaaggggcaaactgatagacgtttaacaattttgaagataattttgnnnnnnnct |
113 |
Q |
| |
|
|||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |
|
|
| T |
48630916 |
cacagacatttgtcacgtcatgttgaccaaatgagtaaattgacggaaggggcaaactgatagacgtttaacaattttggagataattttgtttttttct |
48631015 |
T |
|
| Q |
114 |
ctaatttgaaagtggtattcgcaagaatttacaacttttgaaggtttttgactatttactcattggatgatattactaccgtgcatatttgagtactctc |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |
|
|
| T |
48631016 |
ctaatttgaaagtggtattcgcaagaatttacaacttttgaaggtttttgactatttactcattggatgatattactactgtgcatatttgagtactgtc |
48631115 |
T |
|
| Q |
214 |
tgttcaaagaacccgttactttgtttaaaaactactatagaaagacagcacttgaaaatctagaataaatgtacatttcctttaacaaaaaatttcatcc |
313 |
Q |
| |
|
| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48631116 |
tctttaaagaacccgttactttgtttaaaaactactatagaaagacagcacttgaaaatctagaataaatgtacatttcctttaacaaaaaatttcatcc |
48631215 |
T |
|
| Q |
314 |
ttttgatttgagatatcaattttataatttggccagacggctaataagttaagtaaaacattaacatactctaaaaaatgtgtctcttatcttttaaaaa |
413 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48631216 |
ttttgatttgagatatcatttttataatttggccagacggctaataagttaagt-aaacattaacatactctaaaaaatgtgtctcttatcttttaaaaa |
48631314 |
T |
|
| Q |
414 |
atataacatgacttgagaactgagatttccttctgaagtggacattgagacactaatcaaacgaatatggataaactagatacata |
499 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48631315 |
atataacatgactagagaactgagatttccttctgaagtggacattgagacactaatcaaacgaatatggataaactagatacata |
48631400 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University