View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17013_high_7 (Length: 388)

Name: NF17013_high_7
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17013_high_7
NF17013_high_7
[»] chr7 (4 HSPs)
chr7 (1-369)||(44529885-44530234)
chr7 (145-296)||(43459276-43459427)
chr7 (135-227)||(29785776-29785868)
chr7 (62-111)||(46810157-46810206)
[»] chr2 (3 HSPs)
chr2 (201-296)||(7076003-7076098)
chr2 (281-324)||(17329830-17329873)
chr2 (301-369)||(17329831-17329899)
[»] chr8 (1 HSPs)
chr8 (18-114)||(39972997-39973093)
[»] chr4 (2 HSPs)
chr4 (226-306)||(53762145-53762225)
chr4 (225-281)||(53762100-53762157)


Alignment Details
Target: chr7 (Bit Score: 303; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 1 - 369
Target Start/End: Complemental strand, 44530234 - 44529885
Alignment:
Q  1 agagctactgctgtgttatatacatttaatgcaaatcccatttcaactcctttttctcttctctgaattttaatttgatggacttttatcgtgttctaaa 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44530234 agagctactgctgtgttatatacatttaatgcaaatcccatttcaactcctttttctcttctctgaattttaatttgatggacttttatcgtgttctaaa 44530135  T
Q  101 catgactccatcatatatgtacttttctgccggaaaacaatgcaaaatataatattcttgtattattcactcctacataccaaaaccagtgcaatatact 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44530134 catgactccatcatatatgtacttttctgccggaaaacaatgcaaaatataatattcttgtattattcactcctacataccaaaaccagtgcaatatact 44530035  T
Q  201 tctgtcaatatgaatatgctctagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctgg 300  Q
    ||||||                   ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44530034 tctgtc-------------------atactatagcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctgg 44529954  T
Q  301 tttgatatataatgctggtttgatatataaatattggtttgatcaagtgtataaaattatggtttgatc 369  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  44529953 tttgatatataatgctggtttgatatataaatattggtttgatcaagtgtataaaattatggtttgatc 44529885  T

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Target: chr7; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 145 - 296
Target Start/End: Original strand, 43459276 - 43459427
Alignment:
Q  145 aaatataatattcttgtattattcactcctacataccaaaaccagtgcaatatacttctgtcaatatgaatatgctctagtatactatggcagacttgat 244  Q
    ||||| |||||||||||||||| |||| ||||||||||||| || |||||||| ||||| |||||||||||||||||  ||||||||||||| |||||||    
T  43459276 aaatagaatattcttgtattatgcacttctacataccaaaagcaatgcaatattcttctctcaatatgaatatgctccggtatactatggcaaacttgat 43459375  T
Q  245 gtaattctaattttaatttagcaactactatggcagatttgatatataaatt 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43459376 gtaattctaattttaatttagcaactactatggcagatttgatatataaatt 43459427  T

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Target: chr7; HSP #3
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 135 - 227
Target Start/End: Complemental strand, 29785868 - 29785776
Alignment:
Q  135 aaacaatgcaaaatataatattcttgtattattcactcctacataccaaaaccagtgcaatatacttctgtcaatatgaatatgctctagtat 227  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||    
T  29785868 aaacaatacaaaatataatattcttgtattcttcactcctacataccaaaaccagtgcaatatacttctgtcaatattaatatactctagtat 29785776  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 62 - 111
Target Start/End: Original strand, 46810157 - 46810206
Alignment:
Q  62 tctgaattttaatttgatggacttttatcgtgttctaaacatgactccat 111  Q
    ||||| |||||| ||||| |||| |||| |||||||||||||||||||||    
T  46810157 tctgacttttaacttgatcgactgttattgtgttctaaacatgactccat 46810206  T

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Target: chr2 (Bit Score: 88; Significance: 3e-42; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 201 - 296
Target Start/End: Original strand, 7076003 - 7076098
Alignment:
Q  201 tctgtcaatatgaatatgctctagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt 296  Q
    ||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7076003 tctgtcaatataaatatgctcgagtatactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaatt 7076098  T

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Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 17329830 - 17329873
Alignment:
Q  281 atttgatatataaattctggtttgatatataatgctggtttgat 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  17329830 atttgatatataaattctggtttgatatataatgctggtttgat 17329873  T

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Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 301 - 369
Target Start/End: Original strand, 17329831 - 17329899
Alignment:
Q  301 tttgatatataa-tgctggtttgatatataaatattggtttgatcaagtgtataaaattatggtttgatc 369  Q
    |||||||||||| | |||||||||||||||| |  |||||||||||| ||||||||||||||||||||||    
T  17329831 tttgatatataaattctggtttgatatataa-tgctggtttgatcaactgtataaaattatggtttgatc 17329899  T

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Target: chr8 (Bit Score: 73; Significance: 3e-33; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 18 - 114
Target Start/End: Complemental strand, 39973093 - 39972997
Alignment:
Q  18 atatacatttaatgcaaatcccatttcaactcctttttctcttctctgaattttaatttgatggacttttatcgtgttctaaacatgactccatcat 114  Q
    |||||||||| ||||||||||||||| ||||||||||||||||||||||||||| |||||||||||| |||| |||| |||||||||||||||||||    
T  39973093 atatacatttgatgcaaatcccatttgaactcctttttctcttctctgaatttttatttgatggactcttattgtgtactaaacatgactccatcat 39972997  T

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Target: chr4 (Bit Score: 69; Significance: 7e-31; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 226 - 306
Target Start/End: Original strand, 53762145 - 53762225
Alignment:
Q  226 atactatggcagacttgatgtaattctaattttaatttagcaactactatggcagatttgatatataaattctggtttgat 306  Q
    ||||||||||||||| ||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  53762145 atactatggcagactagatgtcattctaattttaatttagcaactactatggaagatttgatatataaattctggtttgat 53762225  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 281
Target Start/End: Original strand, 53762100 - 53762157
Alignment:
Q  225 tatactatggcagacttgatgtaattctaattttaatttag-caactactatggcaga 281  Q
    ||||||||||||||||||||||||||||  |||| ||| || ||| ||||||||||||    
T  53762100 tatactatggcagacttgatgtaattctggtttttattcagccaaatactatggcaga 53762157  T

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