View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_high_9 (Length: 359)
Name: NF17013_high_9
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_high_9 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 113 - 350
Target Start/End: Original strand, 46873491 - 46873728
Alignment:
| Q |
113 |
gctcaataaataagtatagctgaaacatcaactaaaattgtatataggatggtctattattgaattcaaggtgcaaattgtacaaaacagcaattgagga |
212 |
Q |
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| T |
46873491 |
gctcaataaataagtatagctgaaacatcaactaaaattgtatataggatggtctattattgaattcaaggtgcaaattgtacaaaacagcaattgagga |
46873590 |
T |
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| Q |
213 |
ggtatcaatttgggggtggcctctacaaacagctggaatgatcaccactgggatgtctattcgtacagtaactatcttatcaggaagagttactgaggta |
312 |
Q |
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| T |
46873591 |
ggtatcaatttgggggtggcctctacaaacagctggaatgatcaccactgggatgtctattcgtacagtaactatcttatcaggaagagttactgaggta |
46873690 |
T |
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| Q |
313 |
aattctccaaaatgttttccctttttatgtgatctgtg |
350 |
Q |
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| T |
46873691 |
aattctccaaaatgttttccctttttatgtgatttgtg |
46873728 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 46873394 - 46873464
Alignment:
| Q |
16 |
taaagaactagtatgaatgttgcattttttatttcttgggttgttaaagaactatgaatttgaaaataaag |
86 |
Q |
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| T |
46873394 |
taaagaactagtatgaatgttgcattttttatttcttgggttgttaaagaactatgaatttgaaaataaag |
46873464 |
T |
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