View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_low_1 (Length: 551)
Name: NF17013_low_1
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 489; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 489; E-Value: 0
Query Start/End: Original strand, 19 - 527
Target Start/End: Original strand, 2268285 - 2268793
Alignment:
| Q |
19 |
ctttccttttgttagttgctttcctggtcttagtttattgttgctttccctggttatgtgcactcatcaatatcgtgtgtagttgcatatgtagtctttt |
118 |
Q |
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| T |
2268285 |
ctttccttttgttagttgctttcctggtcttagtttattgttgctttccctggttatgtgcactcatcaatatcgtgtgtagttgcatatgtagtctttt |
2268384 |
T |
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| Q |
119 |
tgttgttatggttatgtttcagcaatctcttgttataagtgtctttcatactaagatactaatccttgggttcattctatttaaggataacttagtctgt |
218 |
Q |
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| T |
2268385 |
tgttgttatggttatgtttcaacaatctcttgttataagtgtctttcatactaagatactaatccttgggttcattctatttaaggataacttagtctgt |
2268484 |
T |
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| Q |
219 |
tgccactttcgttattagttgatttatcagttaatttatgtctaccacttgattttttcagacatgaaaaaactttgtatattagttaatcggtatgtag |
318 |
Q |
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| T |
2268485 |
tgccactttcgttattagttgatttatcagttaatttatgtctatcacttgattttttcagacatgaaaaaactttgtatattagttaatcggtatgtag |
2268584 |
T |
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| Q |
319 |
ttgttttgttaggtggctacctatttctctcacatgtatataattaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgag |
418 |
Q |
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| T |
2268585 |
ttattttgttaggtggctacctatttctctcacatgtatataattaattggtttttgttgttgcccatatcagctcttatagattcttttctaaaatgag |
2268684 |
T |
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| Q |
419 |
acaagattattacttgtctttgatacataagttgttatgtggttttattagggcctatagtgtgctgggtattatggtctaaataggtaatatgagaaaa |
518 |
Q |
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| T |
2268685 |
acaagattattacttgtctttgatacataagttgttatgtggttttattagggcctatagtgtgctgggtattatggtctaaataggtaatctgagaaga |
2268784 |
T |
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| Q |
519 |
attctttgt |
527 |
Q |
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| T |
2268785 |
attctttgt |
2268793 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 470 - 512
Target Start/End: Original strand, 2268809 - 2268851
Alignment:
| Q |
470 |
ggcctatagtgtgctgggtattatggtctaaataggtaatatg |
512 |
Q |
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| T |
2268809 |
ggcctatagtgtgctgggtattatggtctaaatgggtattatg |
2268851 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 458 - 492
Target Start/End: Original strand, 2268865 - 2268899
Alignment:
| Q |
458 |
tggttttattagggcctatagtgtgctgggtatta |
492 |
Q |
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| T |
2268865 |
tggttttatcagggcctatagtgtgctgggtatta |
2268899 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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