View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_low_10 (Length: 358)
Name: NF17013_low_10
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 179; Significance: 2e-96; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 155 - 341
Target Start/End: Original strand, 48431263 - 48431449
Alignment:
| Q |
155 |
aaatttaatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccactttt |
254 |
Q |
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| T |
48431263 |
aaatttgatactcaaattcatgcccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgtacttatccaaagaatccactttt |
48431362 |
T |
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| Q |
255 |
gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaact |
341 |
Q |
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| T |
48431363 |
gctccagactcaaggagaaattgtgtatacttaacctggaataacatcacgagcaacttttaatccatacattacaagaacaaaact |
48431449 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 38 - 105
Target Start/End: Original strand, 48431199 - 48431266
Alignment:
| Q |
38 |
gggaatgaaagcacaaatcagtgtaggactacatgacattaatatactaaaataacaatgaatgaaat |
105 |
Q |
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| T |
48431199 |
gggaatgaaagcacaaatcagtgtaggacgacatgacattaatatactaaaataacaatgaatgaaat |
48431266 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 61; Significance: 4e-26; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 178 - 326
Target Start/End: Complemental strand, 1925606 - 1925459
Alignment:
| Q |
178 |
ccacacattccttcttgtcataacctgatgcatgatgaaaagttgtgttcttgttcttatccaaagaatccacttttgctccagactcaaggagaaattg |
277 |
Q |
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| T |
1925606 |
ccacacattctttcctgccataacctgctgcataatgaagagctgtgttcttgttcttatccaaagcatctacttttgctccagcctcaaggagagcttg |
1925507 |
T |
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| Q |
278 |
tgtatacttaacctggaataacatcacgagcaacttttaatccatacat |
326 |
Q |
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| T |
1925506 |
cgcacacttcacctggaat-atatcaggagcatattttaatccatacat |
1925459 |
T |
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