View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17013_low_11 (Length: 347)
Name: NF17013_low_11
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_11 |
 | |
|
| [»] scaffold0009 (1 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 295; Significance: 1e-166; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 2 - 332
Target Start/End: Complemental strand, 25627641 - 25627311
Alignment:
| Q |
2 |
tgttgtccttcaatggatttatggcacaatttctgatgaccttcttcacaccatcattgagcgggattcaaccgcggaaaatgcgtggaacagattattc |
101 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25627641 |
tgttgtccttcaatggatttatggcacgatttctgatgaccttcttcacatcatcattgagcgggattcaaccgcggaaaatgcgtggaacaaattattc |
25627542 |
T |
|
| Q |
102 |
aacattttctatgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacgtattgtc |
201 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
25627541 |
aacattttctatgacaataaaaattctcgggctctctacctagagcaagaattttctaacgtccatatggaacaatttcctgatgcatccacatattgtc |
25627442 |
T |
|
| Q |
202 |
aacatctcaaatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgtgta |
301 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
25627441 |
aacatctcaaatccctgtctgatcaactctctaatgttggtgctcccgtgtctaacgaaagacttgttcttcaacttatctctggcctgacagatgcgta |
25627342 |
T |
|
| Q |
302 |
tgctacggtgggttcacaaatccgtcatgga |
332 |
Q |
| |
|
||| ||||||||||||||||||||||||||| |
|
|
| T |
25627341 |
tgcaacggtgggttcacaaatccgtcatgga |
25627311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 50685143 - 50685470
Alignment:
| Q |
1 |
ttgttgtccttcaatggatttatggcacaatttctgatgaccttcttcacaccatcattgagcgggattcaaccgcggaaaatgcgtggaacagattatt |
100 |
Q |
| |
|
|||||||||| ||||||||||| ||||| || || ||||| | ||||||||||| || | || ||||| || || ||| | || ||||| | || || |
|
|
| T |
50685143 |
ttgttgtcctacaatggatttacggcactatatcggatgatatccttcacaccattataaaacgagattccactgcagaacaagcatggaatcggttgtt |
50685242 |
T |
|
| Q |
101 |
caacattttctatgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacgtattgt |
200 |
Q |
| |
|
||| ||||| ||||| |||||||||||||| ||||||| ||||||||||||||||| |||| || |||||| |||||||||||||| ||||| || ||| |
|
|
| T |
50685243 |
caatattttttatgataataaaaattctcgtactctctatctagagcaagaattttcaaatgcccgtatggagcaatttcctgatgcctccacctactgt |
50685342 |
T |
|
| Q |
201 |
caacatctcaaatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgtgt |
300 |
Q |
| |
|
|||||||||||||| || ||||| ||||||| || |||||||||||||||||| |||||||| || || ||||| || |||| |||||| || |||| | |
|
|
| T |
50685343 |
caacatctcaaatctctctctgaccaactctttaatgttggtgctcccgtgtccaacgaaagtctagtgcttcagctcatctttggcctcactgatgctt |
50685442 |
T |
|
| Q |
301 |
atgctacggtgggttcacaaatccgtca |
328 |
Q |
| |
|
|||| || || ||||| ||||| ||||| |
|
|
| T |
50685443 |
atgccacagtcggttcccaaattcgtca |
50685470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 2 - 332
Target Start/End: Original strand, 88085 - 88415
Alignment:
| Q |
2 |
tgttgtccttcaatggatttatggcacaatttctgatgaccttcttcacaccatcattgagcgggattcaaccgcggaaaatgcgtggaacagattattc |
101 |
Q |
| |
|
||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
88085 |
tgttgtccttcaatgaatttatggcacgatttctgatgaccttcttcacaccatcattgagcgggattcaaccgcggaaaatgcgtggaacagattattc |
88184 |
T |
|
| Q |
102 |
aacattttctatgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacgtattgtc |
201 |
Q |
| |
|
|||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
88185 |
aacattttctatgataataaaaattatcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacctattgtc |
88284 |
T |
|
| Q |
202 |
aacatctcaaatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgtgta |
301 |
Q |
| |
|
|||||||||||||| |||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||| ||| ||| |
|
|
| T |
88285 |
aacatctcaaatccttgtctgatcaactctctaatgttggtgctcccgtttctaacgaaaggcttgttcttcaacttatctctggcctaacaaatgcgta |
88384 |
T |
|
| Q |
302 |
tgctacggtgggttcacaaatccgtcatgga |
332 |
Q |
| |
|
|| |||||||||||||||||||||||||||| |
|
|
| T |
88385 |
tgttacggtgggttcacaaatccgtcatgga |
88415 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 263; Significance: 1e-146; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 263; E-Value: 1e-146
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 4805475 - 4805150
Alignment:
| Q |
1 |
ttgttgtccttcaatggatttatggcacaatttctgatgaccttcttcacaccatcattgagcgggattcaaccgcggaaaatgcgtggaacagattatt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| |
|
|
| T |
4805475 |
ttgttgtccttcaatggatttatggcaccatttctgatgaccttcttcacaccatcattgagc---attcaaccgcagaaaatgcgtggaacagattatt |
4805379 |
T |
|
| Q |
101 |
caacattttctatgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacgtattgt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
4805378 |
caacattttctatgacaataaaaattctcgagcactctacctagagcaagaattttctaatgtccatatggaacaatttcctgatgcatccacctattgt |
4805279 |
T |
|
| Q |
201 |
caacatctcaaatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgtgt |
300 |
Q |
| |
|
||||||||||||||||||||||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| || |
|
|
| T |
4805278 |
caacatctcaaatccctgtctgatcaactatctaatgttggtgctcccgtatctaacgaaaggcttgttcttcaacttatctctggcctaacagatgcgt |
4805179 |
T |
|
| Q |
301 |
atgctacggtgggttcacaaatccgtcat |
329 |
Q |
| |
|
| |||||| ||||||||||||| |||||| |
|
|
| T |
4805178 |
acgctacgatgggttcacaaattcgtcat |
4805150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 113 - 332
Target Start/End: Complemental strand, 10537186 - 10536965
Alignment:
| Q |
113 |
tgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgat--gcatccacgtattgtcaacatctca |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||| |
|
|
| T |
10537186 |
tgacaataaaaattctcgggctctctacctagagcaagaattttctaatgtccatatggaacaatttcctgatatgcatccacctattgtcaacatctca |
10537087 |
T |
|
| Q |
211 |
aatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgtgtatgctacggt |
310 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
10537086 |
aatccctgtctgatcaactctctaatgttggtgctccagtgtctaacgaaaggcttgttcttcaacttatctctggcctgacagatgcgtatgctacggt |
10536987 |
T |
|
| Q |
311 |
gggttcacaaatccgtcatgga |
332 |
Q |
| |
|
||| |||||||||||||||||| |
|
|
| T |
10536986 |
gggatcacaaatccgtcatgga |
10536965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 47; Significance: 9e-18; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 262 - 332
Target Start/End: Original strand, 47250608 - 47250678
Alignment:
| Q |
262 |
ggcttgttcttcaacttatctctggcctgacagatgtgtatgctacggtgggttcacaaatccgtcatgga |
332 |
Q |
| |
|
|||| |||||||||||||||||||| |||| ||||| |||||||| ||||||||||||||||||| ||||| |
|
|
| T |
47250608 |
ggctggttcttcaacttatctctggtctgagagatgcgtatgctatggtgggttcacaaatccgttatgga |
47250678 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 99 - 154
Target Start/End: Original strand, 55155042 - 55155097
Alignment:
| Q |
99 |
ttcaacattttctatgacaataaaaattctcgggctctctacctagagcaagaatt |
154 |
Q |
| |
|
|||||||| |||| |||||| ||||||||||| || ||||| |||||||||||||| |
|
|
| T |
55155042 |
ttcaacatcttctttgacaacaaaaattctcgtgcactctatctagagcaagaatt |
55155097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 203 - 264
Target Start/End: Complemental strand, 19380788 - 19380727
Alignment:
| Q |
203 |
acatctcaaatccctgtctgatcaactctctattgttggtgctcccgtgtctaacgaaaggc |
264 |
Q |
| |
|
|||||||||||| || | ||| |||||||||| |||||||||||||||||| || ||||||| |
|
|
| T |
19380788 |
acatctcaaatctctctttgaccaactctctaatgttggtgctcccgtgtccaatgaaaggc |
19380727 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University