View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17013_low_18 (Length: 248)

Name: NF17013_low_18
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17013_low_18
NF17013_low_18
[»] chr5 (12 HSPs)
chr5 (113-230)||(36492984-36493101)
chr5 (143-230)||(36492810-36492897)
chr5 (1-58)||(36492875-36492932)
chr5 (113-172)||(36435743-36435802)
chr5 (113-172)||(36445664-36445723)
chr5 (117-172)||(36468101-36468156)
chr5 (1-57)||(36493079-36493138)
chr5 (151-224)||(36475851-36475924)
chr5 (113-144)||(36436118-36436149)
chr5 (113-144)||(36445958-36445989)
chr5 (113-144)||(36468361-36468392)
chr5 (113-144)||(36493173-36493204)


Alignment Details
Target: chr5 (Bit Score: 106; Significance: 4e-53; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 113 - 230
Target Start/End: Original strand, 36492984 - 36493101
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttcctcagtttgcacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccac 212  Q
    ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36492984 tatttggcatcatttacttcattagtcttttcctcagtttggacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccac 36493083  T
Q  213 ctccaccatggtgagaac 230  Q
    ||||||| ||||||||||    
T  36493084 ctccaccgtggtgagaac 36493101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 143 - 230
Target Start/End: Original strand, 36492810 - 36492897
Alignment:
Q  143 tcctcagtttgcacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccatggtgagaac 230  Q
    ||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  36492810 tcctcagcttgcacggcaacaaattcagcatgtgagcagcaatggccatggcaatagtaatggcaaccacctccaccatggtgagaac 36492897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 58
Target Start/End: Original strand, 36492875 - 36492932
Alignment:
Q  1 accacctccaccatggtgagaaccacctccaccgtgagaaccacctccatagtaatgt 58  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36492875 accacctccaccatggtgagaaccacctccaccgtgagaaccacctccatagtaatgt 36492932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 36435743 - 36435802
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttcctcagtttgcacggcaacaaattcagca 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36435743 tatttggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagca 36435802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 113 - 172
Target Start/End: Original strand, 36445664 - 36445723
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttcctcagtttgcacggcaacaaattcagca 172  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36445664 tatttggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagca 36445723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 117 - 172
Target Start/End: Original strand, 36468101 - 36468156
Alignment:
Q  117 tggcatcgtttacttcattagtcttttcctcagtttgcacggcaacaaattcagca 172  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||    
T  36468101 tggcatcatttacttcattagtcttttcctcagtttgcacggcaacagattcagca 36468156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 36493079 - 36493138
Alignment:
Q  1 accacctccaccatggtgagaaccacctccacc---gtgagaaccacctccatagtaatg 57  Q
    |||||||||||| ||||||||||||||||||||   ||||||||||||||||||||||||    
T  36493079 accacctccaccgtggtgagaaccacctccaccgtggtgagaaccacctccatagtaatg 36493138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 151 - 224
Target Start/End: Original strand, 36475851 - 36475924
Alignment:
Q  151 ttgcacggcaacaaattcagcatatgagcagcaatggccatggcaatagtaatgacaaccacctccaccatggt 224  Q
    ||||| |||||||||||||||||  ||||||||   ||||||||||| ||| || |||||||||||||| ||||    
T  36475851 ttgcatggcaacaaattcagcatgcgagcagcacctgccatggcaatggtattggcaaccacctccaccgtggt 36475924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 36436118 - 36436149
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttc 144  Q
    ||||||||||||||||||||||||||||||||    
T  36436118 tatttggcatcgtttacttcattagtcttttc 36436149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 36445958 - 36445989
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttc 144  Q
    ||||||||||||||||||||||||||||||||    
T  36445958 tatttggcatcgtttacttcattagtcttttc 36445989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 36468361 - 36468392
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttc 144  Q
    ||||||||||||||||||||||||||||||||    
T  36468361 tatttggcatcgtttacttcattagtcttttc 36468392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 113 - 144
Target Start/End: Original strand, 36493173 - 36493204
Alignment:
Q  113 tatttggcatcgtttacttcattagtcttttc 144  Q
    ||||||||||||||||||||||||||||||||    
T  36493173 tatttggcatcgtttacttcattagtcttttc 36493204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University