View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_low_3 (Length: 478)
Name: NF17013_low_3
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 21 - 385
Target Start/End: Original strand, 6516527 - 6516895
Alignment:
| Q |
21 |
gaaagatggttctgcatgcaacattaaacctataggacccctaaatgccaaaacatttatatgtatcagtgtaaatattatataataaaaataatcagca |
120 |
Q |
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| T |
6516527 |
gaaagatggttctgcatgcaacattaaacctataggacccctaaatgccaaaacatttatatgtatcagtgtaaatattatataataaaaataatcagca |
6516626 |
T |
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| Q |
121 |
gaaataatatttctacttcagaatcgtcaagaagttcaggatcaccttcaacacgtgtttcccgggcagaattaaatttaaaactgtcatgttagtgacn |
220 |
Q |
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| T |
6516627 |
gaaataatatttttacttcagaatcgtcaagaagttcaggatcaccttcaacacgtgtttcccgggcagaattaaatttaaaactgtcatgttagtgaca |
6516726 |
T |
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| Q |
221 |
nnnnnnggaaacgaaattcaactnnnnnnnnnnttatcactggttttgtaccataaaatactgcaagtgggacgggacaattcaagggctaaggttaagc |
320 |
Q |
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| T |
6516727 |
aaaaaaggaaacgaaattcaactaaaaaaaaaattatcactggttttgtaccataaaatactgcaagt-----gggacaattcaagggctaaggttaagc |
6516821 |
T |
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| Q |
321 |
aacatgttatcagcccacatca---------ttttgatttttgaacaactttctttcacataaggtataacaaa |
385 |
Q |
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| T |
6516822 |
aacatgttatcagcccacatcatgatactacttttgatttttgaacaactttctttcacataaggtataacaaa |
6516895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 27254828 - 27254752
Alignment:
| Q |
137 |
ttcagaatcgtcaagaagttcaggatcaccttcaacacgtgtttcccgggcagaattaaatttaaaactgtcatgtt |
213 |
Q |
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| T |
27254828 |
ttcagaatcgtccagaagttcaggatcaccgtccgcatgtgtttcctgggcacaattaaattcaaaactgtgatgtt |
27254752 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 137 - 213
Target Start/End: Complemental strand, 1746072 - 1745996
Alignment:
| Q |
137 |
ttcagaatcgtcaagaagttcaggatcaccttcaacacgtgtttcccgggcagaattaaatttaaaactgtcatgtt |
213 |
Q |
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| T |
1746072 |
ttcagaatcgtccagaagttcaggatcaccgtcagcatgtgtttcctgagcacaattaaattcaaagctgtgatgtt |
1745996 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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