View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_low_4 (Length: 468)
Name: NF17013_low_4
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 371; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 371; E-Value: 0
Query Start/End: Original strand, 22 - 458
Target Start/End: Original strand, 49383565 - 49383992
Alignment:
| Q |
22 |
gtctatatctccatgtcaaaaattactcttggtgcacctnnnnnnnngaaatatatatggtctagactttcatctaaaaggtttagatttagattgagta |
121 |
Q |
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| T |
49383565 |
gtctatatctccatatcaaaaattactct-ggtgcacctaaaa-----aaagaaatatggtctagactttcatctaaaaggtttagatttagattgagta |
49383658 |
T |
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| Q |
122 |
gttgcttgagagcctaacttgaactagaaaatcaccacagggcattattatagcattctgaggagctataggaccatagtcaaatgctattatcagtttg |
221 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49383659 |
gttgcttgagagcctaacttgaactagaaaatcaccacagggcattattatagcattctgaggagctataggaccatagtcaaatgctattatcagtttg |
49383758 |
T |
|
| Q |
222 |
gaacaaataaattcatatactactactaaagttattaaaaatatttgtctagtgggtccttcaaaatgggacattttcatttttgtactctaatgtgggg |
321 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49383759 |
gaacaaataaattcatatact---actaaagttattaaaaatatttgtctagtgggtccttcaaaatgggacattttcatttttgtactctaatgtgggg |
49383855 |
T |
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| Q |
322 |
ttgtttccgtgacacaagacaggaaaacctcatacaagtatccaaaattcttagttaattttgcgtgcagttagagataattttaactgctccctttgaa |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49383856 |
ttgtttccgtgacacaagacaggaaaacctcatacaagtatccaaaattcttagttaattttgcgtgcagttagagataattttaactgctccctttgaa |
49383955 |
T |
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| Q |
422 |
aattatgaagcaaacaagagcttaggatgtaattgat |
458 |
Q |
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| T |
49383956 |
aattatgaagcaaacaagagcttaggatgtaattgat |
49383992 |
T |
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