View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17013_low_6 (Length: 443)
Name: NF17013_low_6
Description: NF17013
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17013_low_6 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 375; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 375; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 25627627 - 25628057
Alignment:
| Q |
1 |
cattgaaggacaacaacatctagtcgtgcctagagatttagatcggtgtctttgagattaggagatgatgtgatttcaaatgggatgatatgatcaatga |
100 |
Q |
| |
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||||||||||||||| |||| || |||||| |||||||| |||||| |||||||||||||| |||||||||||||||| ||||||||||||||||||||| |
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| T |
25627627 |
cattgaaggacaacagcatcaagacgtgcccagagatttggatcggcgtctttgagattagaagatgatgtgatttcagatgggatgatatgatcaatga |
25627726 |
T |
|
| Q |
101 |
cttgatgaacacgggcatggattttgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaattggtgatgttaga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25627727 |
cttgatgaacacgggcatggattttgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaattggtgatgttaga |
25627826 |
T |
|
| Q |
201 |
gatggtgaatgcgggatgaatgagaggattggtattctgtgtggttgcagagtttgggggagagggggaagatttgggagtggaggagggagatgactgt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||| ||| |
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| T |
25627827 |
gatggtgaatgcgggatgaatgagaggattggtattttgtgtggttgcagagttttggggagaggaggaagatttgggagtggaggagggagatgattgt |
25627926 |
T |
|
| Q |
301 |
gtggtagacatgatgagagaaaggaagctgatgagagcagcgtgggtgagatgagagaaagaagaaggttgtgcagccggttatgtgaggagagcggcgg |
400 |
Q |
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| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
25627927 |
gcggtagacatgatgagagaaaggaagctgatgagagcagcgtgggtgagatgagagaaagaagaaggttgtgcagccggttatgtgagtagagcggcgg |
25628026 |
T |
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| Q |
401 |
cacaattaggtttaggatcagtacctatgct |
431 |
Q |
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| T |
25628027 |
cacaattaggtttaggatcagtacctatgct |
25628057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 82 - 215
Target Start/End: Complemental strand, 50685077 - 50684944
Alignment:
| Q |
82 |
gggatgatatgatcaatgacttgatgaacacgggcatggattttgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttga |
181 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| | |||||||||| |
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| T |
50685077 |
gggatgatatgatcaattacttgatgaacacgggcatggattttgaacagttcagaccacgtgttatattgacccttttcaatactaaatgtaattttga |
50684978 |
T |
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| Q |
182 |
taaaattggtgatgttagagatggtgaatgcggg |
215 |
Q |
| |
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| T |
50684977 |
ttaaatttgtgatgtttgaaatggtgaaggcggg |
50684944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 353; Significance: 0; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 431
Target Start/End: Complemental strand, 88099 - 87663
Alignment:
| Q |
1 |
cattgaaggacaacaacatctagtcgtgcctagagatttagatcggtgtctttgagattaggagatgatgtgatttcaaatgggatgatatgatcaatga |
100 |
Q |
| |
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||||||||||||||| |||| || |||||| |||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |
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| T |
88099 |
cattgaaggacaacatcatcaagacgtgcccagagatttggatcggtgtctttgagattaggacatgatgtgatttcagatgggatgatatgatcaatga |
88000 |
T |
|
| Q |
101 |
cttgatgaacacgggcatggattttgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaa-ttggtgatgttag |
199 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | |
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| T |
87999 |
cttgatgaacacgggcatggattgtgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaaattggtgatgttgg |
87900 |
T |
|
| Q |
200 |
agatggtgaatgcgggatgaatgagaggatt-----ggtattctgtgtggttgcagagtttgggggagagggggaagatttgggagtggaggagggagat |
294 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||| || ||| |||||||||||||||||||||||| |
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| T |
87899 |
agatggtgaatgcgggatgaatgagaggattatattggtattctgtgtggttgcagagttttggggagcggaggatgatttgggagtggaggagggagat |
87800 |
T |
|
| Q |
295 |
gactgtgtggtagacatgatgagagaaaggaagctgatgagagcagcgtgggtgagatgagagaaagaagaaggttgtgcagccggttatgtgaggagag |
394 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
87799 |
gactgtgcggtagacatgatgagagaaaggaagctgatgagagcagcgtgggtgagatgagagaaagaagaaggttgtgcagccggttatgtgaggagag |
87700 |
T |
|
| Q |
395 |
cggcggcacaattaggtttaggatcagtacctatgct |
431 |
Q |
| |
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||||||||||||||||||||||||||||||||||||| |
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| T |
87699 |
cggcggcacaattaggtttaggatcagtacctatgct |
87663 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 431
Target Start/End: Original strand, 4805460 - 4805873
Alignment:
| Q |
1 |
cattgaaggacaacaacatctagtcgtgcctagagatttagatcggtgtctttgagattaggagatgatgtgatttcaaatgggatgatatgatcaatga |
100 |
Q |
| |
|
|||||||||||||||||||| || |||||| | | |||| |||||||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
4805460 |
cattgaaggacaacaacatcaagacgtgcccatatatttggatcggtgtctttgagattaggagatgatgtggtttcggatgggatgatatgatcaatga |
4805559 |
T |
|
| Q |
101 |
cttgatgaacacgggcatggattttgaagagttcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaattggtgatgttaga |
200 |
Q |
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|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4805560 |
cttgatgaacacgggcatggattttgaagaattcagaccaagtgttatattgacccttttcaatacttagggtaattttgataaaattggtgatgttaga |
4805659 |
T |
|
| Q |
201 |
gatggtgaatgcgggatgaatgagaggattggtattctgtgtggttgcagagtttgggggagagggggaagatttgggagtggaggagggagatgactgt |
300 |
Q |
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|||| ||||||||||||||||| || ||||||||||| | |||||| || |||| |||||||| ||||||||||||||| ||| |
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| T |
4805660 |
gatgatgaatgcgggatgaatgggaagattggtattccgcgtggttacaaagtt------------------tttgggagaggaggagggagatgattgt |
4805741 |
T |
|
| Q |
301 |
gtggtagacatgatgagagaaaggaagctgatgagagcagcgtgggtgagatgagagaaagaagaaggttgtgcagccggttatgtgaggagagcggcgg |
400 |
Q |
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| || |||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||| |
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| T |
4805742 |
gcggcagacatgatgagagaaagaaagctgatgagagaagcgtgggtgagatgagagaaagaagaaggtagtgcagccgtttatgtgaggagagcggcga |
4805841 |
T |
|
| Q |
401 |
cacaatta-ggtttaggatcagtacctatgct |
431 |
Q |
| |
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|||||||| ||||||||||||||||||||||| |
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| T |
4805842 |
cacaattagggtttaggatcagtacctatgct |
4805873 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 116 - 209
Target Start/End: Original strand, 29474710 - 29474804
Alignment:
| Q |
116 |
catggattttgaagagttcagaccaagtgttatattgaccctttt-caatacttagggtaattttgataaaattggtgatgttagagatggtgaa |
209 |
Q |
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|||| |||||||| | ||| || || ||||||||||| ||||||| | ||||| | ||||||||| || ||||| |||||||| ||||||||||| |
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| T |
29474710 |
catgaattttgaaaaattcggatcatgtgttatattggccctttttcgatactgaaggtaattttaatgaaatttgtgatgtttgagatggtgaa |
29474804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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