View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17014_low_1 (Length: 727)
Name: NF17014_low_1
Description: NF17014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17014_low_1 |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-121; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 18 - 298
Target Start/End: Original strand, 21088562 - 21088843
Alignment:
| Q |
18 |
atatgctgcgacgcagtgtcgaacatatcgttctacacttatttatgattaatttagtgtgtgagtttcgccgctacattatctggaaccaaaaactcac |
117 |
Q |
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| T |
21088562 |
atatgttgcgacgtggtgtcgaacatatagttctacacttatttatggttaatttagtgtgtaagtttcgccgctgcattatctggaaccaaaaactcac |
21088661 |
T |
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| Q |
118 |
ctaaattttaagcttgaatatcgtttttcttcatagtgttcctttcgatgg-nnnnnnntcttatttgagtcactatcagacactaaattgtagccacct |
216 |
Q |
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| T |
21088662 |
ctaaattttaagcttgaatatcgtttttcttcatagtgttcctttcgatggaaaaaaaatcttatttgagtcgctatcagacactaaattgtagccacct |
21088761 |
T |
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| Q |
217 |
cttcaaacgaggatttaaagtttggttcgccacatcgacggagccaacttctctcactagatcaatcccttgattttctagc |
298 |
Q |
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| T |
21088762 |
cttcaaacgaggatttaaagtttggttcgccacatcgacggagccaacttctctcactagatcaatcccttgattttctagc |
21088843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 172; E-Value: 5e-92
Query Start/End: Original strand, 431 - 716
Target Start/End: Original strand, 21088958 - 21089251
Alignment:
| Q |
431 |
agcctaattagtaccatatatattacatacgtatttatttannnnnnnaattaaaataaaagtaaacaattaggctacgcaacttgttgtccacattaca |
530 |
Q |
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| T |
21088958 |
agcctaattagtaccatatatattacatacgtatttatttatttttttaattaaaataaaagtaaacaattaagctacgcaacttgttgtccatattaca |
21089057 |
T |
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| Q |
531 |
agtaatacacaagccttatgtttcgcagcactgtttccatgatttatggctatggagcaaaataattgtcaattca-------------tagattatgaa |
617 |
Q |
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| T |
21089058 |
agtaatacataagccttatgtttcgcagcactgtttccatgatttatggctatggagcaaaataattgtcaattcatagaattgtattctagattatgaa |
21089157 |
T |
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| Q |
618 |
aagnnnnnnnntgtattctagattataatatatactacattatacatacacatttattttaaaagaaagcttaattaattcattgttcaactgactcga |
716 |
Q |
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| T |
21089158 |
aag-aaaaaaatgtattctagattataatatatactacattatacatgcacatttattttaaaagaaagc----ttaattcattgttcaactgactcga |
21089251 |
T |
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