View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17014_low_3 (Length: 243)
Name: NF17014_low_3
Description: NF17014
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17014_low_3 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 46238979 - 46239213
Alignment:
| Q |
1 |
tatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46238979 |
tatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatct |
46239078 |
T |
|
| Q |
101 |
atgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239079 |
atgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatga |
46239178 |
T |
|
| Q |
201 |
gtctagtggggaagatgaagacaatttgatgatgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
46239179 |
gtctagtggggaagatgaagacaatttgatgatgt |
46239213 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Complemental strand, 3455678 - 3455444
Alignment:
| Q |
1 |
tatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacaacattgcagatgagattgccatct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
3455678 |
tatcaagaccatgagattaggctgtggtgtaaaatggataggattgagaatgactttgttcaagttgatctagacagcattgcagatgagattgccatct |
3455579 |
T |
|
| Q |
101 |
atgctgtgggtgaaggaattgatggacagatttttgtggagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455578 |
atgctgtgggtgaaggaattgatggacaaatttttgttgagcataatgttactaatatgtctgtcaaggttgatatgcctaactttgtggatttgaatga |
3455479 |
T |
|
| Q |
201 |
gtctagtggggaagatgaagacaatttgatgatgt |
235 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
3455478 |
gtctagtggggaagatgaagacaatttgatgatgt |
3455444 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University