View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17015_high_10 (Length: 400)
Name: NF17015_high_10
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_high_10 |
 | |
|
| [»] scaffold0011 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 15 - 379
Target Start/End: Complemental strand, 17395004 - 17394640
Alignment:
| Q |
15 |
caaaggaggacaacttgtggacatttgaggaatttcttgagtatcggaaggaggaagagcttcaccttggtgaatggagaaagaacgatggtaccgcatt |
114 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |
|
|
| T |
17395004 |
caaaggaggacaacttgtggacatttgaggaatttcttaagtgtcggaaggaggaagagcttcaccttggtggatggagaaagaacaatggtaccgcatt |
17394905 |
T |
|
| Q |
115 |
ctgcatgaactggagaaaggacggtgttggtgctaccttcaagtgcaggagagagaacaggatctgtgcaatcctgcaagatttgcacctcggaacggag |
214 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
17394904 |
ctgcatgaactggagaaaggacggtgttggtgctaccttcaagtgcaggagagagaacaggatctgtgcgatcctgcaagatttgcacctcggaacggag |
17394805 |
T |
|
| Q |
215 |
agccacacgacagcgctggaagtacctacgacggtgtttttggagtgggctgagcgagtttcagccattggaaagtgtaacagaaaacagttaaggtggt |
314 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||| |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17394804 |
agccacgcgacagcgctggaagtacctacgacggtgtttttgtagtgggctgagcaagttccagccattggaaagtgtaacagaaaacagttaaggtggt |
17394705 |
T |
|
| Q |
315 |
gggtttggggaaatccgaaggaatcgatgaaacgatttccctccttctagcaccaatgatatgga |
379 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17394704 |
gggtttggggaaatccgaaggaatcgatgaaacgatttccctccttctagcaccaatgatatgga |
17394640 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 285 - 371
Target Start/End: Complemental strand, 17379751 - 17379665
Alignment:
| Q |
285 |
gaaagtgtaacagaaaacagttaaggtggtgggtttggggaaatccgaaggaatcgatgaaacgatttccctccttctagcaccaat |
371 |
Q |
| |
|
|||||| |||||||||| ||||| ||||||| |||||||||||||||||||||| |||| || ||| ||||||||||||| ||||| |
|
|
| T |
17379751 |
gaaagtataacagaaaaaagttacagtggtggatttggggaaatccgaaggaatcaatgatacaattcccctccttctagctccaat |
17379665 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0011 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: scaffold0011
Description:
Target: scaffold0011; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 286 - 365
Target Start/End: Complemental strand, 233009 - 232931
Alignment:
| Q |
286 |
aaagtgtaacagaaaacagttaaggtggtgggtttggggaaatccgaaggaatcgatgaaacgatttccctccttctagc |
365 |
Q |
| |
|
||||||||||| |||||||||| |||||||| |||| |||||| ||||||||| |||||||| |||||||| |||||||| |
|
|
| T |
233009 |
aaagtgtaacataaaacagttacggtggtggatttgaggaaattcgaaggaattgatgaaac-atttcccttcttctagc |
232931 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University