View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_high_11 (Length: 396)

Name: NF17015_high_11
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_high_11
NF17015_high_11
[»] chr6 (2 HSPs)
chr6 (36-83)||(32313131-32313178)
chr6 (233-296)||(1912440-1912503)
[»] chr1 (3 HSPs)
chr1 (235-288)||(46937627-46937680)
chr1 (235-272)||(5898484-5898521)
chr1 (232-297)||(15255151-15255216)
[»] scaffold0223 (1 HSPs)
scaffold0223 (227-308)||(10600-10681)
[»] chr5 (1 HSPs)
chr5 (224-297)||(42440150-42440223)
[»] chr3 (1 HSPs)
chr3 (235-290)||(2990931-2990986)
[»] chr7 (2 HSPs)
chr7 (232-296)||(32612395-32612459)
chr7 (232-296)||(24673358-24673422)
[»] chr4 (1 HSPs)
chr4 (244-295)||(26275472-26275523)
[»] chr8 (1 HSPs)
chr8 (222-278)||(42822638-42822694)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 36 - 83
Target Start/End: Complemental strand, 32313178 - 32313131
Alignment:
Q  36 tattgttgaatcattgtagattagtttttcacacatttttagttttat 83  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32313178 tattgttgaatcattgtagattagtttttcacacatttttagttttat 32313131  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 233 - 296
Target Start/End: Complemental strand, 1912503 - 1912440
Alignment:
Q  233 ctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 296  Q
    |||||||| ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  1912503 ctatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcgatcc 1912440  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 235 - 288
Target Start/End: Original strand, 46937627 - 46937680
Alignment:
Q  235 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttc 288  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttc 46937680  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 235 - 272
Target Start/End: Original strand, 5898484 - 5898521
Alignment:
Q  235 atagtggcgctataacactgttgcatagcggattttga 272  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  5898484 atagtggcgctatagcactgtagcatagcggattttga 5898521  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 232 - 297
Target Start/End: Complemental strand, 15255216 - 15255151
Alignment:
Q  232 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 297  Q
    ||||||| ||| ||||| || ||||||||||| || ||| || ||||| |||||||||||||||||    
T  15255216 gctatagcggcactatagcaatgttgcatagcagaatttaaacaaaccactattttctgcgatcca 15255151  T

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Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 227 - 308
Target Start/End: Complemental strand, 10681 - 10600
Alignment:
Q  227 tagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatccacatttgataac 308  Q
    |||| ||||||| |||  ||||| ||||||||||||| || |||||| ||||| |||||||||||||| |||| ||||||||    
T  10681 tagaggctatagaggcattataatactgttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattgataac 10600  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 224 - 297
Target Start/End: Original strand, 42440150 - 42440223
Alignment:
Q  224 aaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 297  Q
    ||||||| |||||||  | ||||||||||||| |||||||||| |||||| ||||| || ||||||||||||||    
T  42440150 aaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctgcgatcca 42440223  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 235 - 290
Target Start/End: Complemental strand, 2990986 - 2990931
Alignment:
Q  235 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctg 290  Q
    |||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  2990986 atagtggccctatatcactgttgcatagcggaatttgaatgaacctctattttctg 2990931  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 32612459 - 32612395
Alignment:
Q  232 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 296  Q
    ||||| ||||||||||| ||||||||  ||||||| |||||  ||||| ||||||||||||||||    
T  32612459 gctatggtggcgctatagcactgttgtgtagcggaatttgactaaaccgctattttctgcgatcc 32612395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 232 - 296
Target Start/End: Complemental strand, 24673422 - 24673358
Alignment:
Q  232 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 296  Q
    ||||||| ||| | ||| |||||||||||||| || |||||| ||||| |||||||||| |||||    
T  24673422 gctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttctgtgatcc 24673358  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 244 - 295
Target Start/End: Complemental strand, 26275523 - 26275472
Alignment:
Q  244 ctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatc 295  Q
    |||||||||| |||||||||||| |||||| ||| | |||||||||||||||    
T  26275523 ctataacacttttgcatagcggaatttgaacaaatcgctattttctgcgatc 26275472  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 222 - 278
Target Start/End: Original strand, 42822638 - 42822694
Alignment:
Q  222 tgaaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaac 278  Q
    ||||||||  ||||||| ||||||||| ||||||||||||| ||| |||||| ||||    
T  42822638 tgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaac 42822694  T

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