View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_high_12 (Length: 387)
Name: NF17015_high_12
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 105 - 366
Target Start/End: Original strand, 18323202 - 18323463
Alignment:
| Q |
105 |
ctatatgtatataaacttgtaccactaaaatctcctatattgtgggagagaattagttaattaaccactctcattgaattgaaaacatgtgaaagacagt |
204 |
Q |
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| T |
18323202 |
ctatatgtatataaacttgtaccactaaaatctcctatattgtgggagagaattagttaattaaccactctctttgaattgaaaacatgtgaaagacagt |
18323301 |
T |
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| Q |
205 |
aaaatatgcaccttcgtacacccgtgataaaggaatgatttgcttaggacagggtgctaattattggttaacctatgcaaaagattctgtctttaactgg |
304 |
Q |
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| T |
18323302 |
aaaatatgcaccttcgtacacccgtgataaaggaatgatttgcttaggacagggtgctaattattggttaacctatgcaaaagattctgtctttaactgg |
18323401 |
T |
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| Q |
305 |
atggcttggtactcggtagctaaccaaactaaccggtttctcgtgcggcacgagtcgtgcct |
366 |
Q |
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| T |
18323402 |
atggcttggtactcggtagttaaccaaactaaccggttcctcgtgcggcacgagtcgtgcct |
18323463 |
T |
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Target: chr2 (Bit Score: 44; Significance: 6e-16; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 38 - 81
Target Start/End: Complemental strand, 615693 - 615650
Alignment:
| Q |
38 |
catatatatcaaagtgatggaaaagaacgaatctctttcacgta |
81 |
Q |
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| T |
615693 |
catatatatcaaagtgatggaaaagaacgaatctctttcacgta |
615650 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 38 - 81
Target Start/End: Original strand, 498617 - 498660
Alignment:
| Q |
38 |
catatatatcaaagtgatggaaaagaacgaatctctttcacgta |
81 |
Q |
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| T |
498617 |
catatatgtcaaagtgatggaaaagaacgaatctctttcacgta |
498660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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