View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_high_21 (Length: 250)
Name: NF17015_high_21
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_high_21 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 250
Target Start/End: Complemental strand, 26218432 - 26218185
Alignment:
| Q |
19 |
atcacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtggatatgcact |
118 |
Q |
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| T |
26218432 |
atcacatacaatgaatttattactccttatacttcgccatacatcacagtagtttccaatctgtttggcaatatggcattactgaaagtggatatgcact |
26218333 |
T |
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| Q |
119 |
taaatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacc----------------tcaccaaaataaattcatcatttt |
202 |
Q |
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| T |
26218332 |
taaatccgaaaccacattcattcttgtgtgtatctaaactatcccaagatctatttgacctcacatctatttgacctcaccaaaataaattcatcatttt |
26218233 |
T |
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| Q |
203 |
tgtcaattttgacacaaagattagttggtagtaataatatgctcaaca |
250 |
Q |
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| T |
26218232 |
tgtcaattttgacacaaagattagttggtagtaataatatgctcaaca |
26218185 |
T |
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