View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_high_26 (Length: 239)

Name: NF17015_high_26

Description: NF17015

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17015_high_26

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 206; E-Value: 1e-113

Query Start/End: Original strand, 18 - 239

Target Start/End: Original strand, 36756384 - 36756605

Alignment:

Q	18	acaaagctggatttggtaacgcggtaatgcaagttatatgtttggcatccagacttaaaccttgatgttttggattctccttgaaactaacattttgctt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36756384	acaaagctggatttggtaacgccgtaatgcaagttgtatgtttggcatccagacttaaaccttgatgttttggattctccttgaaactaacattttgctt	36756483	T

Q	118	tctgtttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctcttgtctatgaactaaatagacacttttgctata	217	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	36756484	tatgtttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctcttgtctatgaactaaatagaaacttttgctata	36756583	T

Q	218	gaaagagaaacataagggtatc	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36756584	gaaagagaaacataagggtatc	36756605	T

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Target: chr5; HSP #2

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 18 - 84

Target Start/End: Original strand, 36749058 - 36749124

Alignment:

Q	18	acaaagctggatttggtaacgcggtaatgcaagttatatgtttggcatccagacttaaaccttgatg	84	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36749058	acaaagctggatttgataacgcggtaaatcaagttatattttttgcatgaagacttaaaccttgatg	36749124	T

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Target: chr5; HSP #3

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 70 - 110

Target Start/End: Original strand, 36772170 - 36772210

Alignment:

Q	70	acttaaaccttgatgttttggattctccttgaaactaacat	110	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36772170	acttgaaccttgatgttttggattcttcttgaaactaacat	36772210	T

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Target: chr5; HSP #4

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 122 - 162

Target Start/End: Original strand, 36749318 - 36749358

Alignment:

Q	122	tttttctttcctctataacaagttttctaaatttgagtatt	162	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36749318	ttttgctttcctctgtaacaaattttctaaatttgagtatt	36749358	T

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Target: chr5; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 122 - 186

Target Start/End: Original strand, 36767622 - 36767686

Alignment:

Q	122	tttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctctt	186	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	36767622	ttttgctttcctctgtagctagttttctaaattttagtattggtttagatatgccatcttctctt	36767686	T

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