View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_high_6 (Length: 488)

Name: NF17015_high_6
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_high_6
NF17015_high_6
[»] chr6 (2 HSPs)
chr6 (128-175)||(32313131-32313178)
chr6 (325-388)||(1912440-1912503)
[»] chr1 (3 HSPs)
chr1 (327-380)||(46937627-46937680)
chr1 (327-364)||(5898484-5898521)
chr1 (324-389)||(15255151-15255216)
[»] scaffold0223 (1 HSPs)
scaffold0223 (319-400)||(10600-10681)
[»] chr5 (1 HSPs)
chr5 (316-389)||(42440150-42440223)
[»] chr3 (1 HSPs)
chr3 (327-382)||(2990931-2990986)
[»] chr7 (2 HSPs)
chr7 (324-388)||(32612395-32612459)
chr7 (324-388)||(24673358-24673422)
[»] chr4 (1 HSPs)
chr4 (336-387)||(26275472-26275523)
[»] chr8 (1 HSPs)
chr8 (314-370)||(42822638-42822694)


Alignment Details
Target: chr6 (Bit Score: 48; Significance: 3e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 128 - 175
Target Start/End: Complemental strand, 32313178 - 32313131
Alignment:
Q  128 tattgttgaatcattgtagattagtttttcacacatttttagttttat 175  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  32313178 tattgttgaatcattgtagattagtttttcacacatttttagttttat 32313131  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 325 - 388
Target Start/End: Complemental strand, 1912503 - 1912440
Alignment:
Q  325 ctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 388  Q
    |||||||| ||||||| ||| ||||||||||||| |||||| |||||||||||||| |||||||    
T  1912503 ctatagtgacgctatagcaccgttgcatagcggaatttgaacaaacctctattttccgcgatcc 1912440  T

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Target: chr1 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 327 - 380
Target Start/End: Original strand, 46937627 - 46937680
Alignment:
Q  327 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttc 380  Q
    |||||||||||||||||||||||||||||||| |||||| ||||| ||||||||    
T  46937627 atagtggcgctataacactgttgcatagcggaatttgaacaaaccgctattttc 46937680  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 327 - 364
Target Start/End: Original strand, 5898484 - 5898521
Alignment:
Q  327 atagtggcgctataacactgttgcatagcggattttga 364  Q
    |||||||||||||| |||||| ||||||||||||||||    
T  5898484 atagtggcgctatagcactgtagcatagcggattttga 5898521  T

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Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 389
Target Start/End: Complemental strand, 15255216 - 15255151
Alignment:
Q  324 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 389  Q
    ||||||| ||| ||||| || ||||||||||| || ||| || ||||| |||||||||||||||||    
T  15255216 gctatagcggcactatagcaatgttgcatagcagaatttaaacaaaccactattttctgcgatcca 15255151  T

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Target: scaffold0223 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0223
Description:

Target: scaffold0223; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 319 - 400
Target Start/End: Complemental strand, 10681 - 10600
Alignment:
Q  319 tagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatccacatttgataac 400  Q
    |||| ||||||| |||  ||||| ||||||||||||| || |||||| ||||| |||||||||||||| |||| ||||||||    
T  10681 tagaggctatagaggcattataatactgttgcatagcagaatttgaacaaaccgctattttctgcgattcacaattgataac 10600  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 316 - 389
Target Start/End: Original strand, 42440150 - 42440223
Alignment:
Q  316 aaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcca 389  Q
    ||||||| |||||||  | ||||||||||||| |||||||||| |||||| ||||| || ||||||||||||||    
T  42440150 aaatagaggctatagcagtgctataacactgtagcatagcggaatttgaacaaaccactgttttctgcgatcca 42440223  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 327 - 382
Target Start/End: Complemental strand, 2990986 - 2990931
Alignment:
Q  327 atagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctg 382  Q
    |||||||| ||||| ||||||||||||||||| ||||||  |||||||||||||||    
T  2990986 atagtggccctatatcactgttgcatagcggaatttgaatgaacctctattttctg 2990931  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 32612459 - 32612395
Alignment:
Q  324 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 388  Q
    ||||| ||||||||||| ||||||||  ||||||| |||||  ||||| ||||||||||||||||    
T  32612459 gctatggtggcgctatagcactgttgtgtagcggaatttgactaaaccgctattttctgcgatcc 32612395  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 324 - 388
Target Start/End: Complemental strand, 24673422 - 24673358
Alignment:
Q  324 gctatagtggcgctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatcc 388  Q
    ||||||| ||| | ||| |||||||||||||| || |||||| ||||| |||||||||| |||||    
T  24673422 gctatagcggcaccatatcactgttgcatagctgaatttgaacaaaccactattttctgtgatcc 24673358  T

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Target: chr4 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 336 - 387
Target Start/End: Complemental strand, 26275523 - 26275472
Alignment:
Q  336 ctataacactgttgcatagcggattttgaaaaaacctctattttctgcgatc 387  Q
    |||||||||| |||||||||||| |||||| ||| | |||||||||||||||    
T  26275523 ctataacacttttgcatagcggaatttgaacaaatcgctattttctgcgatc 26275472  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 314 - 370
Target Start/End: Original strand, 42822638 - 42822694
Alignment:
Q  314 tgaaatagaagctatagtggcgctataacactgttgcatagcggattttgaaaaaac 370  Q
    ||||||||  ||||||| ||||||||| ||||||||||||| ||| |||||| ||||    
T  42822638 tgaaatagtggctatagcggcgctatagcactgttgcatagtggaatttgaacaaac 42822694  T

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