View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_high_7 (Length: 460)
Name: NF17015_high_7
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 10 - 444
Target Start/End: Original strand, 30906169 - 30906603
Alignment:
| Q |
10 |
attattctctaatatcaaccaaacacaaactcaaaccataataaacaaagttgatacctctattccaagacattgaattctttcgtaaaccacgtccatc |
109 |
Q |
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| T |
30906169 |
attattctctaatatcaaccaaacacaaactcaaaccataataaacaaagttgatacctctattccaagacattgaattcgttcgtaaaccacgtccatc |
30906268 |
T |
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| Q |
110 |
accggcaggaaaaaacggacccaattcagtaaaggcacctcctccaatggaggaacaacccggacctgaaaaattaacaaagatacaacttaatctctct |
209 |
Q |
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| T |
30906269 |
accggcaggaaaaaacggacccaattcagtaaaggcacctcctccaatggaggaacaacctggacctgaaaaattaacaaagttactacttaatctctct |
30906368 |
T |
|
| Q |
210 |
caaatctcaattaatatacagattatgagccttgtaacaggatttgaatttgaatctgatgccgccgctatttttaaaaaattaaaagtatagcatcttt |
309 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30906369 |
caaatctcaattaatatacagattatgagccttgtaacaggatttgaatttgaatctgatgccgccgctatttttaaaaaattaaaagtatagcatcttt |
30906468 |
T |
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| Q |
310 |
cgtataaggtaaaggtactttctgtcaagtgtcaactgtnnnnnnngcaagaaccattcaacatttttgatccacagattctgttcttgtcaaacaaaac |
409 |
Q |
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| T |
30906469 |
cgtataaggtaaaggtactttctgtcaagtgtcaactgttaaaaaagcaagaaccattcaacatttttgatccacagattctgttcttgtcaaacaaaac |
30906568 |
T |
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| Q |
410 |
atgattttgtactataaagacaagaacaacaacac |
444 |
Q |
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| T |
30906569 |
atgattttgtactataaagacaagaacaacaacac |
30906603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 5e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 65 - 186
Target Start/End: Complemental strand, 40972154 - 40972033
Alignment:
| Q |
65 |
acctctattccaagacattgaattctttcgtaaaccacgtccatcaccggcaggaaaaaacggacccaattcagtaaaggcacctcctccaatggaggaa |
164 |
Q |
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| T |
40972154 |
acctctattccaagattttttatttcttcgtaaaccacgtccatcaccggtaggataaaatggacccaattccgtaaaggcacctcctccaattgaggaa |
40972055 |
T |
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| Q |
165 |
caacccggacctgaaaaattaa |
186 |
Q |
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|| || |||||| ||||||||| |
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| T |
40972054 |
catcctggacctaaaaaattaa |
40972033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 63 - 187
Target Start/End: Original strand, 40961549 - 40961673
Alignment:
| Q |
63 |
atacctctattccaagacattgaattctttcgtaaaccacgtccatcaccggcaggaaaaaacggacccaattcagtaaaggcacctcctccaatggagg |
162 |
Q |
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|||||| ||||||| ||| ||||||| ||||||| ||| ||||||||||| | |||| |||| ||||||||||||||||| |||||||||||||| |||| |
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| T |
40961549 |
atacctgtattccaggactttgaattttttcgtagaccgcgtccatcaccagaaggataaaatggacccaattcagtaaaagcacctcctccaatagagg |
40961648 |
T |
|
| Q |
163 |
aacaacccggacctgaaaaattaac |
187 |
Q |
| |
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|||| ||||||||| ||||||||| |
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| T |
40961649 |
aacatcccggacctagaaaattaac |
40961673 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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