View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_high_9 (Length: 403)
Name: NF17015_high_9
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 1 - 394
Target Start/End: Complemental strand, 25089414 - 25089018
Alignment:
| Q |
1 |
atattggcattcacaactttcttctgttctgcttcatttgttaccactttcttctctgattcattcataacaatcttcttttctggttcattcacatcaa |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
25089414 |
atattggcattcacaactttcttctgttctgcttcattggttaccactttcttctctgattcattcaaaacaatcttcttttctggttcattcacatcaa |
25089315 |
T |
|
| Q |
101 |
ccttatcattttcttgttgattctcaataacaactttggattctggaatacta---atttccttcacatcaaaacactcattctccatctcaatctcaat |
197 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
25089314 |
ccttatcattttcttgttgattctcaataacaactttggattctggaatactactaatttccttcacatcaaaactctcattctccatctcaatctcaat |
25089215 |
T |
|
| Q |
198 |
ttcctcatcatccacaacatcaccatctgattcagaatcaccaccaacacgaaccactgattcaggtgaattttgaaccacaccaaaattgcttgatatc |
297 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||| |
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| T |
25089214 |
ttcctcatcatccacaacatcaccatctgattcagaatcaccaccaacacgaaccaccgattcaggtgaattttgaaccacacaaacattgcttgatatc |
25089115 |
T |
|
| Q |
298 |
tctttctcttgacacacatcaaaatcctcaacattttcatctttctcagcttcaatcttttcaaacccatcatccaattcatcaacctcatattctt |
394 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
25089114 |
tctttctcttgacacacatcaaaatcctcaacattttcatctttctcagcttcaatcttttcaaacccatcatccaattcatcaacctcattttctt |
25089018 |
T |
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