View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_13 (Length: 349)
Name: NF17015_low_13
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_13 |
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Alignment Details
Target: chr2 (Bit Score: 317; Significance: 1e-179; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 29979653 - 29979314
Alignment:
| Q |
1 |
tgaggtcagattctattatttccgcaatatcttcccttactttgagccgtccctattgccagagcacacgtacattatgccaccatatttctttatctaa |
100 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29979653 |
tgaggtcagattctattatttccgcaatatcttcc-ttactttgagccgtccctcttgccagagcacacgtacattatgccaccatatttctttatctaa |
29979555 |
T |
|
| Q |
101 |
cttattgtacatctttaataaattatttatgccatattgctaatttgatatgcaacatgattacccatatcatatacttattgtttttgtgtgttcatgt |
200 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
29979554 |
cttattgtacagctttaataaattatttatgccatattgctaatttgatatgcaacatgatcacccatatcatatacttattgtttttgtgtgttcatgt |
29979455 |
T |
|
| Q |
201 |
gcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgctcat |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29979454 |
gcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgctcat |
29979355 |
T |
|
| Q |
301 |
acaatcaattcatcttgagcctttttctctagctattctct |
341 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| |
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| T |
29979354 |
acaatcaattcatcttaagcctttttctctagctattctct |
29979314 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 119; E-Value: 9e-61
Query Start/End: Original strand, 4 - 327
Target Start/End: Complemental strand, 29983948 - 29983626
Alignment:
| Q |
4 |
ggtcagattctattatttccgcaatatcttcccttactttgagccgtccctattgccagagcacacgtacattat----gccaccatatttctttatcta |
99 |
Q |
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||||||||||||| |||||| ||||||||| | |||||| |||| |||||| ||||||||||||||||||||||| | | |||||||||| ||||| |
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| T |
29983948 |
ggtcagattctatgatttccacaatatcttgc-ttacttcgagctgtccctgttgccagagcacacgtacattatttaggtcttcatatttcttaatcta |
29983850 |
T |
|
| Q |
100 |
acttattgtacatctttaataaattatttatgccatattgctaatttgatatgcaacatgattacccatatc-atatacttattgtttttgtgtgttcat |
198 |
Q |
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| |||| ||||| ||||||| |||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||| ||||| ||||| ||||||||| |
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| T |
29983849 |
atttatggtacaactttaatttgttatttatgccatattgcta-tttaatatgcaacatgatcacccatatccatataattattatttttatgtgttcat |
29983751 |
T |
|
| Q |
199 |
gtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgctc |
298 |
Q |
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|||||||||||| ||| ||||||| ||| |||| || |||||||||||||||| |||||| |||| | |||||||||||| || || |||| ||| |
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| T |
29983750 |
gtgcacatgactctttgggccatggtggatgtaacgtacccttcttgaagtgacgtggcacttcattaatgcctatataaaacccaaatttcc----ctc |
29983655 |
T |
|
| Q |
299 |
atacaatcaattcatcttgagcctttttc |
327 |
Q |
| |
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|||||||| ||||||||| |||||||||| |
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| T |
29983654 |
atacaatccattcatcttaagcctttttc |
29983626 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 66 - 325
Target Start/End: Complemental strand, 29993636 - 29993378
Alignment:
| Q |
66 |
acacgtacattatgccaccatatttctttatctaacttattgtacatctttaataaattatttatgccatattgctaatttgatatgcaacatgattacc |
165 |
Q |
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||||||||||||||| ||||||||||||||||| || |||||| ||||||||| |||||||||||||||||||||| |||||||||||||||| ||| |
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| T |
29993636 |
acacgtacattatgctcccatatttctttatctatct-attgtatatctttaatttattatttatgccatattgctaagctgatatgcaacatgatcacc |
29993538 |
T |
|
| Q |
166 |
catatcatatacttattgtttttgtg-tgttcatgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcat |
264 |
Q |
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|||||| || | |||| || || | | || ||||| ||||||||||||| ||||||||||||| ||| ||||||||||||||| || |||||||| |
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| T |
29993537 |
catatcc-atccatattattattattatttttgggtgcaaatgactgtttaggtcatgatgggtgtaatgttcccttcttgaagtgatgtgccacctcat |
29993439 |
T |
|
| Q |
265 |
aagggcctatataaaatcctaacttcccttgctcatacaatcaattcatcttgagcctttt |
325 |
Q |
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|| |||||||||||| |||||||||||||| |||||| ||||||||||||| |||||||| |
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| T |
29993438 |
gagtgcctatataaaaccctaacttcccttggtcatactatcaattcatcttaagcctttt |
29993378 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 198 - 331
Target Start/End: Complemental strand, 29973861 - 29973728
Alignment:
| Q |
198 |
tgtgcacatgactgtttaggccatgatgggtgtattgtccccttcttgaagtgacatggcacctcataagggcctatataaaatcctaacttcccttgct |
297 |
Q |
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||||||||||||||||| || ||||||||||||| |||||||||||||||||||| ||||||||||| | |||||||||||| ||||||||||||||| |
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| T |
29973861 |
tgtgcacatgactgtttgggtcatgatgggtgtaatgtccccttcttgaagtgacgtggcacctcatgaatgcctatataaaaccctaacttcccttgca |
29973762 |
T |
|
| Q |
298 |
catacaatcaattcatcttgagcctttttctcta |
331 |
Q |
| |
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||||||||||||| ||||| |||||||||||||| |
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| T |
29973761 |
catacaatcaatttatcttaagcctttttctcta |
29973728 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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