View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_low_14 (Length: 344)

Name: NF17015_low_14
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_low_14
NF17015_low_14
[»] chr4 (3 HSPs)
chr4 (2-334)||(7653188-7653520)
chr4 (1-68)||(9109802-9109869)
chr4 (157-205)||(9109680-9109728)
[»] chr5 (1 HSPs)
chr5 (1-329)||(21902964-21903306)
[»] chr7 (1 HSPs)
chr7 (3-316)||(11362490-11362816)
[»] chr2 (1 HSPs)
chr2 (93-334)||(33172165-33172412)
[»] chr6 (2 HSPs)
chr6 (3-316)||(4059442-4059765)
chr6 (1-51)||(7863572-7863622)
[»] chr3 (2 HSPs)
chr3 (4-230)||(20592339-20592565)
chr3 (219-259)||(20592297-20592337)


Alignment Details
Target: chr4 (Bit Score: 224; Significance: 1e-123; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 2 - 334
Target Start/End: Complemental strand, 7653520 - 7653188
Alignment:
Q  2 tgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgttt 101  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                       |||||||||    
T  7653520 tgtctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattgttt 7653421  T
Q  102 ctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgt 201  Q
    |||||||||||||||||||||||||||||||||||||| ||||||   ||||||||||||| ||||||||||||||||| ||||||||||||||||||||    
T  7653420 ctcagtagctatcgcacaatcgtcgagtcgccgtgaaacagtgttccatcttcgtcgccgcgaaatcgtaatttctaggtaaatcttctaatctctgtgt 7653321  T
Q  202 ttttcaattgtttaattgtttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgtaattgttataggt 301  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  7653320 ttttcaattgtttaattgtttttgattttgaattgttctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattttaattgttataggt 7653221  T
Q  302 aaattgattttcgttttttattttgaatctgtg 334  Q
    |||||||||||||||||| ||||||||||||||    
T  7653220 aaattgattttcgtttttgattttgaatctgtg 7653188  T

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Target: chr4; HSP #2
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 1 - 68
Target Start/End: Complemental strand, 9109869 - 9109802
Alignment:
Q  1 ctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgt 68  Q
    ||||||||||||||||||||||| |||||| |||||||||| ||||||||||||||||||||||||||    
T  9109869 ctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaactaacttcaatctatgt 9109802  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 157 - 205
Target Start/End: Complemental strand, 9109728 - 9109680
Alignment:
Q  157 cgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttttt 205  Q
    |||||| ||||||||||||||||| ||||| | ||||||||||||||||    
T  9109728 cgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttttt 9109680  T

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Target: chr5 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 1 - 329
Target Start/End: Complemental strand, 21903306 - 21902964
Alignment:
Q  1 ctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgtt 100  Q
    ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                       ||||||||    
T  21903306 ctgtctcaaattccagctcaaaatggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcattttgaaattgtt 21903207  T
Q  101 tctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtg 200  Q
    |||||| |||||||||||| ||| |||||||||||||||  |||||  ||||||||| |||| ||||||||||||||||| |||||||||||||||||||    
T  21903206 tctcagaagctatcgcacagtcgccgagtcgccgtgaaaccgtgttccgtcttcgtcaccgcgaaatcgtaatttctaggtaaatcttctaatctctgtg 21903107  T
Q  201 tttttcaattgtttaattgt--------------ttttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaatt 286  Q
    ||||||||||||||||||||              |||||||||||||||| |||||||||| ||||||||||||| |||| |||||||||||||||||||    
T  21903106 tttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaagtttgtgttgaatcgtaatt 21903007  T
Q  287 gtaattgttataggtaaattgattttcgttttttattttgaat 329  Q
     ||||| |||||||||||||||||||||||||| |||||||||    
T  21903006 ttaattattataggtaaattgattttcgtttttgattttgaat 21902964  T

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Target: chr7 (Bit Score: 127; Significance: 2e-65; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 11362490 - 11362816
Alignment:
Q  3 gtctcaaattccagctcaaaagggtaacataactcaaatcctt-cttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgttt 101  Q
    ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||                       |||||||||    
T  11362490 gtctcaaattccagctcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcgattttcattttgaaattgttt 11362589  T
Q  102 ctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgt 201  Q
    ||| | |||||||||||||||| |||||||||||||||   ||||   |||||||||| || ||||||||||||||||| ||||||||||||||||||||    
T  11362590 ctctgaagctatcgcacaatcgccgagtcgccgtgaaaccatgttcc-tcttcgtcgctgcgaaatcgtaatttctaggtaaatcttctaatctctgtgt 11362688  T
Q  202 ttttcaattgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgt 288  Q
    |||||||||||||||||||||             |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||| |    
T  11362689 ttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttgaatggtaatttt 11362788  T
Q  289 aattgttataggtaaattgattttcgtt 316  Q
    ||||||||||||||||||||||||||||    
T  11362789 aattgttataggtaaattgattttcgtt 11362816  T

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Target: chr2 (Bit Score: 116; Significance: 6e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 93 - 334
Target Start/End: Original strand, 33172165 - 33172412
Alignment:
Q  93 aaattgtttctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaa 192  Q
    |||||||||||||| ||||||||||||        ||||||||||||   ||||  |||||| ||||||| ||||||||||||||||| |||||||||||    
T  33172165 aaattgtttctcagcagctatcgcaca--------gtcgccgtgaaaccttgttccgtcttcatcgccgcgaaatcgtaatttctaggtaaatcttctaa 33172256  T
Q  193 tctctgtgtttttcaattgtttaattgttt--------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaa 278  Q
    ||||||||||||||||||||||||||||||              |||||||||||||| |||||||||| ||||||||||||| |||||||||||| |||    
T  33172257 tctctgtgtttttcaattgtttaattgttttttatttttcgtttttgattttgaattgttctaggtaaattttaattgtaattatcaactttgtgtagaa 33172356  T
Q  279 tcgtaattgtaattgttataggtaaattgattttcgttttttattttgaatctgtg 334  Q
    |||||||| ||||||||||| |||||||||||||||||||| ||||||||||||||    
T  33172357 tcgtaattttaattgttataagtaaattgattttcgtttttgattttgaatctgtg 33172412  T

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Target: chr6 (Bit Score: 106; Significance: 5e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 3 - 316
Target Start/End: Original strand, 4059442 - 4059765
Alignment:
Q  3 gtctcaaattccagctcaaaagggtaacataactcaaatcctt-cttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgttt 101  Q
    |||||||||||||| |||||| ||||||||||||||||||||| ||||||||||||||||||||||||                       |||||||||    
T  4059442 gtctcaaattccagatcaaaaaggtaacataactcaaatcctttcttcaactaacttcaatctatgtatttttgtttcaattttcattttgaaattgttt 4059541  T
Q  102 ctcagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgt 201  Q
    |||   |||||||||||||||| |||||||||||||||   ||||    | || ||| ||| | ||||||||||||||| ||||||||||||||||||||    
T  4059542 ctctaaagctatcgcacaatcgccgagtcgccgtgaaaccatgtt----cctcttcgtcgcgacatcgtaatttctaggtaaatcttctaatctctgtgt 4059637  T
Q  202 ttttcaattgtttaattgttt-------------ttgattttgaattgctctaggtaaactttaattgtaattgtcaactttgtgttgaatcgtaattgt 288  Q
    |||||||||||||||||||||             |||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||| |||||| |    
T  4059638 ttttcaattgtttaattgttttttattttcgtttttgattttgaattgttgtaggtaaattttaattgtaattatcaactttgtgttgaatggtaatttt 4059737  T
Q  289 aattgttataggtaaattgattttcgtt 316  Q
    ||||||||||||||||||||||||||||    
T  4059738 aattgttataggtaaattgattttcgtt 4059765  T

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Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 7863622 - 7863572
Alignment:
Q  1 ctgtctcaaattccagctcaaaagggtaacataactcaaatccttcttcaa 51  Q
    ||||||||||||||||||||||| |||||| |||||||||| |||||||||    
T  7863622 ctgtctcaaattccagctcaaaaaggtaacctaactcaaattcttcttcaa 7863572  T

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Target: chr3 (Bit Score: 102; Significance: 1e-50; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 4 - 230
Target Start/End: Complemental strand, 20592565 - 20592339
Alignment:
Q  4 tctcaaattccagctcaaaagggtaacataactcaaatccttcttcaactaacttcaatctatgtannnnnnnnnnnnnnnnnnnnnnnaaattgtttct 103  Q
    |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||                       |||||||||||    
T  20592565 tctcaaattccagctcaaaaaggtaacataactcaaatccttcttcaactaacttcaatctatgtatttttgttttgattttcgttttgaaattgtttct 20592466  T
Q  104 cagtagctatcgcacaatcgtcgagtcgccgtgaaaaagtgttttgtcttcgtcgccgcaaaatcgtaatttctaggcaaatcttctaatctctgtgttt 203  Q
    ||| |||||||||||| ||| |||||||||||||||  |||||  |||||||||||||| ||||||||||||||||| ||||| | ||||||||||||||    
T  20592465 cagcagctatcgcacattcgccgagtcgccgtgaaaccgtgttccgtcttcgtcgccgcgaaatcgtaatttctaggtaaatcctgtaatctctgtgttt 20592366  T
Q  204 ttcaattgtttaattgtttttgatttt 230  Q
    ||||||||||||||| ||||| |||||    
T  20592365 ttcaattgtttaattattttttatttt 20592339  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 219 - 259
Target Start/End: Complemental strand, 20592337 - 20592297
Alignment:
Q  219 gtttttgattttgaattgctctaggtaaactttaattgtaa 259  Q
    |||||||||||||||||| |||||||||| |||||| ||||    
T  20592337 gtttttgattttgaattgttctaggtaaattttaatcgtaa 20592297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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