View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_15 (Length: 344)
Name: NF17015_low_15
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_15 |
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Alignment Details
Target: chr1 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 1 - 334
Target Start/End: Complemental strand, 26218184 - 26217852
Alignment:
| Q |
1 |
cattggacgagatcgaatgcaggacatatttaattaagatttctctacctacttgagaaagacattgattacttcatgagttgatcttttttcaaattct |
100 |
Q |
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| T |
26218184 |
cattggacgagatcgaatgcaggacatatttaattaagatttctctacctacttgagaaagacatcgattacttcatgagtt-atcttttttcaaattct |
26218086 |
T |
|
| Q |
101 |
atcttagatgaatttgaaggtgnnnnnnnnctcgaattaccagtaataggagaccaagatattttccactacctaaaacttgtctcatcccaagaatgta |
200 |
Q |
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|||||||||||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
26218085 |
atcttagatgaatttgaaggtgttttttttctcgacttaccagtaataggagacccagatattttccactacctaaaacttgtctcaccccaagaatgta |
26217986 |
T |
|
| Q |
201 |
agaattagaatctttcatcggtgatgtgatattcctactacgctatatttctaacttttgaaaattgattgactggcctgacatgtcttcttaagtttta |
300 |
Q |
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||||||||||||||||| |||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26217985 |
agaattagaatctttcaccggtgatgtgatattcctactatgctatatttttaacttttgaaaattgattgactggcctgacatgtcttcttaagtttta |
26217886 |
T |
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| Q |
301 |
aaaatattttgcatcactcaagcttcaccctatg |
334 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |
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| T |
26217885 |
aaaatattttgcatcactcaagcttcaccctatg |
26217852 |
T |
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