View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_2 (Length: 775)
Name: NF17015_low_2
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 681; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 681; E-Value: 0
Query Start/End: Original strand, 7 - 743
Target Start/End: Complemental strand, 41011148 - 41010412
Alignment:
| Q |
7 |
gaagaatatgacaagaccttgtgattattggtttggattgttgtctagtgtgtttgaaatggattctattccaaatgatgttccaaagggtcacttggtt |
106 |
Q |
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| T |
41011148 |
gaagaaaatgacaagaccttgtgattattggtttggattgttgtctagtgtgtttgaaatggattctattccaaatgatgttccaaagggtcacttggtt |
41011049 |
T |
|
| Q |
107 |
gtgtatgtaggtgataactataagagatttgtcatcaagattggattactccatcatccacttttcaaggccttgttggaacaagctcgagaagaatatg |
206 |
Q |
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| T |
41011048 |
gtgtatgtaggtgagaactataagagatttgtcatcaagattggattactccatcatccacttttcaaggccttgttggaacaagctcgagaagaatatg |
41010949 |
T |
|
| Q |
207 |
atttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatgaaaaggtgtttgt |
306 |
Q |
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| T |
41010948 |
atttcattgcagattctaaactttgtattccatgtaatgaacatcttttccttagtgttcttagttttgctagctccacacataatgaaaaggtgtttgt |
41010849 |
T |
|
| Q |
307 |
ttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagctatgctgatatat |
406 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41010848 |
ttgtgtctgacatgagaaatttatcatcctttaattttacttgagacattagttcatatattatactagcttttaagttctaacagctatgctgatatat |
41010749 |
T |
|
| Q |
407 |
atagttgattgatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatgaggttcctgttctgttttctttgttct |
506 |
Q |
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| T |
41010748 |
atagttgattcatgtgttgattaagtgtcatgtatgtagagtgccaatttgaatcaattaattcaggaacatgaggctcctgttctgttttctttgttct |
41010649 |
T |
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| Q |
507 |
aaataaggaaagagttttgttttttattggcattttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttcgacaacaatttaaatagtt |
606 |
Q |
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| T |
41010648 |
aaataaggaaagagttttgttttttattggcattttaatgtaggaaaatgagattttgacacacaaatgacgtcaaagttcgacaacaatttaaatagtt |
41010549 |
T |
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| Q |
607 |
aacacgttgtctatgtgagtgagtatagtttagttgacagggacattgctttatatatataaggattagagttcgaattccggacgctctatttattcgt |
706 |
Q |
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| T |
41010548 |
aacacgttgtctatgtaagtgactatagtttagttgacagggacattgctttatatatgtaaggatcagagttcgaatttcgaacgctatatttattcgt |
41010449 |
T |
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| Q |
707 |
catataaaggtgaatttttaactaatagtctacttca |
743 |
Q |
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| T |
41010448 |
catataaaggtgaatttttaactactagactacttca |
41010412 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 68; Significance: 6e-30; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 68; E-Value: 6e-30
Query Start/End: Original strand, 77 - 264
Target Start/End: Original strand, 28118791 - 28118978
Alignment:
| Q |
77 |
ccaaatgatgttccaaagggtcacttggttgtgtatgtaggtgataactataagagatttgtcatcaagattggattactccatcatccacttttcaagg |
176 |
Q |
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|||| |||||| ||||| |||||| ||||||| |||||||| || || | || |||| ||| ||||| |||| ||| || ||||||||||| ||||| | |
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| T |
28118791 |
ccaagtgatgtaccaaaaggtcacatggttgtatatgtaggagagaatcacaaaagatatgtgatcaaaattgcattgcttcatcatccactcttcaaag |
28118890 |
T |
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| Q |
177 |
ccttgttggaacaagctcgagaagaatatgatttcattgcagattctaaactttgcattccatgtaatgaacatcttttccttagtgt |
264 |
Q |
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| T |
28118891 |
ccttgttggatcaagctcaagaagagtatgatttcatggctgattcaaaactatgtattccttgtcatgaacatcttttcctaagtgt |
28118978 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 83 - 186
Target Start/End: Original strand, 42597798 - 42597901
Alignment:
| Q |
83 |
gatgttccaaagggtcacttggttgtgtatgtaggtgataactataagagatttgtcatcaagattggattactccatcatccacttttcaaggccttgt |
182 |
Q |
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||||| ||||| || ||||| ||||| ||||| ||||| | | |||||||||||||||||| |||| |||| ||||||||| ||||||||| |||| |
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| T |
42597798 |
gatgtgccaaaaggacacttagttgtctatgttggtgaggattgcaagagatttgtcatcaaggttggcacactcaatcatccacctttcaaggctttgt |
42597897 |
T |
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| Q |
183 |
tgga |
186 |
Q |
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|||| |
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| T |
42597898 |
tgga |
42597901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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