View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_low_22 (Length: 250)

Name: NF17015_low_22
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_low_22
NF17015_low_22
[»] chr6 (4 HSPs)
chr6 (166-239)||(10754597-10754671)
chr6 (165-239)||(10750279-10750354)
chr6 (165-239)||(10748683-10748758)
chr6 (166-226)||(18613098-18613159)
[»] chr3 (3 HSPs)
chr3 (166-238)||(31125751-31125824)
chr3 (166-233)||(38930471-38930539)
chr3 (166-233)||(53107642-53107710)
[»] chr7 (3 HSPs)
chr7 (166-233)||(23780472-23780540)
chr7 (166-233)||(43920610-43920678)
chr7 (166-233)||(40706109-40706177)
[»] chr4 (1 HSPs)
chr4 (166-233)||(38393563-38393631)
[»] chr2 (5 HSPs)
chr2 (166-233)||(6801054-6801122)
chr2 (166-233)||(35926125-35926193)
chr2 (166-233)||(39990583-39990651)
chr2 (1-54)||(35925931-35925985)
chr2 (166-240)||(35920134-35920209)
[»] chr1 (8 HSPs)
chr1 (166-233)||(39972786-39972854)
chr1 (166-239)||(22908321-22908395)
chr1 (166-238)||(48049405-48049478)
chr1 (166-233)||(29812825-29812893)
chr1 (166-233)||(48040176-48040244)
chr1 (166-233)||(48053130-48053198)
chr1 (166-233)||(48042228-48042296)
chr1 (166-233)||(48054682-48054750)


Alignment Details
Target: chr6 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 166 - 239
Target Start/End: Original strand, 10754597 - 10754671
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 239  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  10754597 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 10754671  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 10750279 - 10750354
Alignment:
Q  165 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 239  Q
    ||||||||||||||||||||||||||||| ||  |||||||| | |||||||||| |||||||  ||||| |||||    
T  10750279 gggggcattccgagaattgaactcgggacctcttgcaccctaagcgagaatcataccactagatcaaatgcccttt 10750354  T

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Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 10748683 - 10748758
Alignment:
Q  165 gggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 239  Q
    |||||||||||||||||||| |||| ||| || | |||||||   ||||||||||||||||||| ||||| |||||    
T  10748683 gggggcattccgagaattgagctcgagacctctcacaccctaaacgagaatcatatcactagaccaaatgcccttt 10748758  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 226
Target Start/End: Complemental strand, 18613159 - 18613098
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactaga 226  Q
    ||||||||||||||||| |||||||||| || ||||||||| |  ||||||||| |||||||    
T  18613159 ggggcattccgagaattaaactcgggacctctcgcaccctaagcaagaatcataccactaga 18613098  T

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Target: chr3 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 31125824 - 31125751
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 238  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| ||||| ||||    
T  31125824 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatgccctt 31125751  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 38930471 - 38930539
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38930471 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38930539  T

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Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 53107710 - 53107642
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  53107710 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 53107642  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 23780540 - 23780472
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  23780540 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 23780472  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 43920678 - 43920610
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  43920678 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 43920610  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 40706177 - 40706109
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || |||||| || | ||||||||||  ||||||| |||||    
T  40706177 ggggcattccgagaattgaactcgggacctctcgcaccttaagcgagaatcatacaactagaccaaatg 40706109  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 38393563 - 38393631
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  38393563 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 38393631  T

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Target: chr2 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 6801054 - 6801122
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  6801054 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 6801122  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 35926125 - 35926193
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  35926125 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 35926193  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 39990651 - 39990583
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39990651 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39990583  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 35925931 - 35925985
Alignment:
Q  1 atattgtcaatgaaaa-tcttgtggcttttcttacaatatttatagttctgtaat 54  Q
    |||||||||||||||| ||||||||| ||||| ||||||| ||||||||||||||    
T  35925931 atattgtcaatgaaaaatcttgtggcctttctcacaatatatatagttctgtaat 35925985  T

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Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 35920134 - 35920209
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctttg 240  Q
    |||||||||||||||||||||| ||||| || ||||||||| |  ||||||||| |||||||| | ||| ||||||    
T  35920134 ggggcattccgagaattgaacttgggacctctcgcaccctaagcaagaatcataccactagaccagatgccctttg 35920209  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 39972786 - 39972854
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||||| | |||||||||| |||||||| |||||    
T  39972786 ggggcattccgagaattgaactcgggacctctcgcaccctaagcgagaatcataccactagaccaaatg 39972854  T

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Target: chr1; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 239
Target Start/End: Complemental strand, 22908395 - 22908321
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtccttt 239  Q
    |||||||||||||||||||||||| ||| || ||||||||| | |||||||||| |||||||| ||||| |||||    
T  22908395 ggggcattccgagaattgaactcgagacctctcgcaccctaagcgagaatcataccactagaccaaatgcccttt 22908321  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 166 - 238
Target Start/End: Complemental strand, 48049478 - 48049405
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatgtcctt 238  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| ||||| ||||    
T  48049478 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatgccctt 48049405  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Original strand, 29812825 - 29812893
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  29812825 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 29812893  T

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Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 48040244 - 48040176
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||| ||||||||||| || ||||||| | | |||||||||| |||||||| |||||    
T  48040244 ggggcattccgagaatcgaactcgggacctctcgcacccaaagcgagaatcataccactagaccaaatg 48040176  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 48053198 - 48053130
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||||||||||||||| || ||||||| | | |||||| ||| |||||||| |||||    
T  48053198 ggggcattccgagaattgaactcgggacctctcgcacccaaagcgagaattataccactagaccaaatg 48053130  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 48042296 - 48042228
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    |||||||||||||||| |||||||| || || ||||||| | | |||||||||| |||||||| |||||    
T  48042296 ggggcattccgagaatcgaactcggaacctctcgcacccgaagcgagaatcataccactagaccaaatg 48042228  T

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Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 166 - 233
Target Start/End: Complemental strand, 48054750 - 48054682
Alignment:
Q  166 ggggcattccgagaattgaactcgggacttc-cgcaccctatgtgagaatcatatcactagacgaaatg 233  Q
    ||||||||||||||||||||||||| || || ||||||| | | |||||||||| | |||||| |||||    
T  48054750 ggggcattccgagaattgaactcggaacctctcgcacccaaagcgagaatcatacctctagaccaaatg 48054682  T

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