View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17015_low_23 (Length: 250)
Name: NF17015_low_23
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_23 |
 | |
|
| [»] scaffold0227 (1 HSPs) |
| |
|
| [»] chr5 (2 HSPs) |
| |
|
| [»] chr6 (1 HSPs) |
| |
|
| [»] scaffold1195 (3 HSPs) |
| | |
|
Alignment Details
Target: scaffold0227 (Bit Score: 238; Significance: 1e-132; HSPs: 1)
Name: scaffold0227
Description:
Target: scaffold0227; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Original strand, 11476 - 11725
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11476 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcgtttcacattgcactactttggcattttaagccagagtatagaga |
11575 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11576 |
agttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
11675 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11676 |
aattatgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
11725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 6081601 - 6081846
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6081601 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcgtttcacattgcactactttggcattttaagccagagtatagaga |
6081700 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6081701 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagttatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
6081800 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6081801 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
6081846 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 67 - 250
Target Start/End: Original strand, 15567336 - 15567524
Alignment:
| Q |
67 |
cactactttggcattttaagccagagtatagagacgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacac |
166 |
Q |
| |
|
||||||||||||||||| ||||||||||||||| || |||||||||| |||||||||||||||| || ||||||||||||||||||||||| |||||| |
|
|
| T |
15567336 |
cactactttggcattttcagccagagtatagagc--ttttacctatatcagatgaagaagaggaatttgaattggaatgggagtcatcgacgcttcacac |
15567433 |
T |
|
| Q |
167 |
attcagccttcaatcagaagaaactgatcaaggaaattctgaactca-------ttcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
|||| |||||||| |||||||||| | |||| ||||| || |||| ||||||||| |||||||||||| |||||||||||||| |
|
|
| T |
15567434 |
attcggccttcaactagaagaaactaaccaagaaaattttgttctcattcagatttcagacagtagaagagaaaaacgaggaaaaggtaga |
15567524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 15432369 - 15432455
Alignment:
| Q |
67 |
cactactttggcattttaagccagagtatagagac--gttctacctatatctgatgaagaagaggaatctggattggaatgggagtc |
151 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| ||| |||||||||||||||||||||||||||| | |||||||||| |||| |
|
|
| T |
15432369 |
cactactttggcattttaagcctgaggatagagagctgttttacctatatctgatgaagaagaggaatcggaattggaatggtagtc |
15432455 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 15490725 - 15490808
Alignment:
| Q |
67 |
cactactttggcattttaagccagagtatagagacgttctacctatatctgatgaagaagaggaatctggattggaatgggagtc |
151 |
Q |
| |
|
|||||||||||||||||||||| ||| | ||| | || |||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
15490725 |
cactactttggcattttaagcctgagga-agatagcttttacctatatctgatgaagaagaggaatctgaattggaatggtagtc |
15490808 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 106 - 151
Target Start/End: Original strand, 16945048 - 16945093
Alignment:
| Q |
106 |
tacctatatctgatgaagaagaggaatctggattggaatgggagtc |
151 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
16945048 |
tacctatatctgatgaagaagaggaatctgaattggaatgggagtc |
16945093 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 246
Target Start/End: Original strand, 15432465 - 15432501
Alignment:
| Q |
210 |
ctcattcagacagcagaagagaaaaatgaggaaaagg |
246 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||| |
|
|
| T |
15432465 |
ctcattcagacagtagaagtgaaaaatgaggaaaagg |
15432501 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 15490818 - 15490858
Alignment:
| Q |
210 |
ctcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
||||||||||||| | ||| ||||||||||||||||||||| |
|
|
| T |
15490818 |
ctcattcagacagtaaaagtgaaaaatgaggaaaaggtaga |
15490858 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 238; Significance: 1e-132; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 29527064 - 29526815
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29527064 |
ctctcgtatggtggcagtggtggagttgatgccatctgcatgcgagttggcaagcatttcacattgcactactttggcattttaagccagagtatagaga |
29526965 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29526964 |
cgttctacctatatctgatgaagaagaagaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
29526865 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
29526864 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
29526815 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 154; E-Value: 9e-82
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 39702631 - 39702382
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||| |||||||| |||||||||||||||||||||| ||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
39702631 |
ctctcatatggtggaagtggtggagtcgatgccatctacatgcgagttggcgaacgtttcatgttgcactactttggcattttaagccagagtatagaga |
39702532 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
| |||||||||||||||||||||| |||||||||| ||||| ||||||||||| |||| ||||||| ||||||||||| |||||||| |||| |||||| |
|
|
| T |
39702531 |
cattctacctatatctgatgaagatgaggaatctgcattggtatgggagtcattgacgtctcacacgttcagccttcatccagaagaatctgaccaagga |
39702432 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
||||||| |||||||||||| |||||||| ||| |||||||||||||| |
|
|
| T |
39702431 |
aattctgctctcattcagacaacagaagaggaaatcgaggaaaaggtaga |
39702382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 10583100 - 10583345
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583100 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcgtttcacattgcactactttggcattttaagccagagtatagaga |
10583199 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583200 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagttattgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
10583299 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10583300 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
10583345 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 1 - 246
Target Start/End: Original strand, 49122528 - 49122773
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49122528 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcgtttcacattgcactactttggcattttaagccagagtatagaga |
49122627 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49122628 |
cgttctacctatatcagatgaagaagaggaatctggattggaatgggagttatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
49122727 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
246 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
49122728 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaagg |
49122773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 250
Target Start/End: Complemental strand, 18132802 - 18132553
Alignment:
| Q |
1 |
ctctcgtatggtggcagtggtggagtcgatgccatctgcatgcgagttggcgagcatttcacattgcactactttggcattttaagccagagtatagaga |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||| | ||| |||||||||||||| ||||||||||||||||| ||||||||||| |
|
|
| T |
18132802 |
ctctcgtatggtggcagtggtggagtcgatggcatctgcatgcgagtggcaaagcgtttcacattgcacttctttggcattttaagccggagtatagaga |
18132703 |
T |
|
| Q |
101 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18132702 |
cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaagga |
18132603 |
T |
|
| Q |
201 |
aattctgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
18132602 |
aattatgaactcattcagacagcagaagagaaaaatgaggaaaaggtaga |
18132553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195 (Bit Score: 51; Significance: 2e-20; HSPs: 3)
Name: scaffold1195
Description:
Target: scaffold1195; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 130 - 244
Target Start/End: Original strand, 1436 - 1550
Alignment:
| Q |
130 |
aatctggattggaatgggagtcatcgacgcctcacacattcagccttcaatcagaagaaactgatcaaggaaattctgaactcattcagacagcagaaga |
229 |
Q |
| |
|
|||||| ||||||||||||||| |||| || ||||||||||||||||||| || ||||||| | |||||||| | || |||||| |||||| ||||| |
|
|
| T |
1436 |
aatctgaattggaatgggagtcgtcgatgcttcacacattcagccttcaactaggagaaactaaccaaggaaaatttgttctcatttagacagtagaagt |
1535 |
T |
|
| Q |
230 |
gaaaaatgaggaaaa |
244 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
1536 |
gaaaaatgaggaaaa |
1550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 67 - 151
Target Start/End: Original strand, 500 - 584
Alignment:
| Q |
67 |
cactactttggcattttaagccagagtatagaga-cgttctacctatatctgatgaagaagaggaatctggattggaatgggagtc |
151 |
Q |
| |
|
|||||||||||||||||||||| ||| || || | |||| |||||||||||||||||||||||||||||| |||||||||| |||| |
|
|
| T |
500 |
cactactttggcattttaagcctgaggattgacagcgtt-tacctatatctgatgaagaagaggaatctgaattggaatggtagtc |
584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1195; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 210 - 250
Target Start/End: Original strand, 594 - 634
Alignment:
| Q |
210 |
ctcattcagacagcagaagagaaaaatgaggaaaaggtaga |
250 |
Q |
| |
|
||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
594 |
ctcattcagacagtagaagtgaaaaatgaggaaaaggtaga |
634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University