View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_24 (Length: 245)
Name: NF17015_low_24
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_24 |
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Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-101; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 18 - 234
Target Start/End: Original strand, 12944838 - 12945057
Alignment:
| Q |
18 |
aaacattgtttataagggaaaaagaaaaacacatgctac---aaagtgtcacatagaggattgaggagcaacagaaacagcagagagtataaatttctta |
114 |
Q |
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| T |
12944838 |
aaacattgtttataagggaaaaagaaaaacacatgctaccacaaagtgtcacatagaggattgaggagcaacagaaacagcagagagtataaatttctta |
12944937 |
T |
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| Q |
115 |
acattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgctacccgcgtgctg |
214 |
Q |
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| T |
12944938 |
acattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgcaccccacgtgccg |
12945037 |
T |
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| Q |
215 |
caaaaatcttcgccagctcc |
234 |
Q |
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| T |
12945038 |
ccaaaatcttcgccagctcc |
12945057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 103 - 240
Target Start/End: Original strand, 12937254 - 12937391
Alignment:
| Q |
103 |
ataaatttcttaacattttcaagcaaaacttgtgccttagaacgatcaaagatttccacagcatgatacccatcctcatcaaaacaggactccacgtgct |
202 |
Q |
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|||||||||||||| | ||||| || |||||||||||| | ||||||||| ||||||||||||| ||||||||||| |||| |||||||||||| |
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| T |
12937254 |
ataaatttcttaacgtaatcaagtaatgcttgtgccttagcaggatcaaagagttccacagcatgaaacccatcctcacaaaaaacagactccacgtgca |
12937353 |
T |
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| Q |
203 |
acccgcgtgctgcaaaaatcttcgccagctccctttgc |
240 |
Q |
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| T |
12937354 |
ccccacgtgcctccaaaatcttcactagctccttttgc |
12937391 |
T |
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