View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_low_26 (Length: 239)

Name: NF17015_low_26

Description: NF17015

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17015_low_26

[»] chr5 (5 HSPs)

Alignment Details

Target: chr5 (Bit Score: 206; Significance: 1e-113; HSPs: 5)

Name: chr5

Description:

Target: chr5; HSP #1

Raw Score: 206; E-Value: 1e-113

Query Start/End: Original strand, 18 - 239

Target Start/End: Original strand, 36756384 - 36756605

Alignment:

Q	18	acaaagctggatttggtaacgcggtaatgcaagttatatgtttggcatccagacttaaaccttgatgttttggattctccttgaaactaacattttgctt	117	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36756384	acaaagctggatttggtaacgccgtaatgcaagttgtatgtttggcatccagacttaaaccttgatgttttggattctccttgaaactaacattttgctt	36756483	T

Q	118	tctgtttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctcttgtctatgaactaaatagacacttttgctata	217	Q
		\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|
T	36756484	tatgtttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctcttgtctatgaactaaatagaaacttttgctata	36756583	T

Q	218	gaaagagaaacataagggtatc	239	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36756584	gaaagagaaacataagggtatc	36756605	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2

Raw Score: 39; E-Value: 0.0000000000003

Query Start/End: Original strand, 18 - 84

Target Start/End: Original strand, 36749058 - 36749124

Alignment:

Q	18	acaaagctggatttggtaacgcggtaatgcaagttatatgtttggcatccagacttaaaccttgatg	84	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\| \|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36749058	acaaagctggatttgataacgcggtaaatcaagttatattttttgcatgaagacttaaaccttgatg	36749124	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3

Raw Score: 33; E-Value: 0.000000001

Query Start/End: Original strand, 70 - 110

Target Start/End: Original strand, 36772170 - 36772210

Alignment:

Q	70	acttaaaccttgatgttttggattctccttgaaactaacat	110	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36772170	acttgaaccttgatgttttggattcttcttgaaactaacat	36772210	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 122 - 162

Target Start/End: Original strand, 36749318 - 36749358

Alignment:

Q	122	tttttctttcctctataacaagttttctaaatttgagtatt	162	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	36749318	ttttgctttcctctgtaacaaattttctaaatttgagtatt	36749358	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5

Raw Score: 29; E-Value: 0.0000003

Query Start/End: Original strand, 122 - 186

Target Start/End: Original strand, 36767622 - 36767686

Alignment:

Q	122	tttttctttcctctataacaagttttctaaatttgagtattaatttacatatgccatctgctctt	186	Q
		\|\|\|\| \|\|\|\|\|\|\|\|\| \|\| \| \|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\| \|\|\|\| \|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|
T	36767622	ttttgctttcctctgtagctagttttctaaattttagtattggtttagatatgccatcttctctt	36767686	T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]