View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_low_27 (Length: 239)

Name: NF17015_low_27
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_low_27
NF17015_low_27
[»] chr3 (8 HSPs)
chr3 (18-222)||(33093947-33094151)
chr3 (18-222)||(37580840-37581044)
chr3 (18-209)||(33714875-33715066)
chr3 (18-219)||(36811047-36811248)
chr3 (18-218)||(37587574-37587774)
chr3 (145-219)||(27005919-27005993)
chr3 (18-216)||(33708994-33709192)
chr3 (143-222)||(37582363-37582442)
[»] chr2 (1 HSPs)
chr2 (18-82)||(32785792-32785856)
[»] chr7 (1 HSPs)
chr7 (31-84)||(18724389-18724442)
[»] chr8 (1 HSPs)
chr8 (18-84)||(18315293-18315359)
[»] chr5 (1 HSPs)
chr5 (18-84)||(41901555-41901621)
[»] chr4 (1 HSPs)
chr4 (19-84)||(8184051-8184116)


Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 33093947 - 33094151
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33093947 caaactagaggttttgaacttgtcaaagtcatgagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 33094046  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgcta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33094047 aattgccgtgatatcacggaggacggagttaggctagtggtagtaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgcta 33094146  T
Q  218 atatt 222  Q
    |||||    
T  33094147 atatt 33094151  T

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Target: chr3; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 18 - 222
Target Start/End: Original strand, 37580840 - 37581044
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||| ||||| |||||||||||||| |||||| |||||||| ||||| | |||| |||||||| | |||| |||| |||||  ||||| ||  |  ||    
T  37580840 caaactcgaggtattgaacttgtcaaactcaagaattgatgataaagtattgtatgtgatctcaatgatttgccctcggcttctgcaactggacttacaa 37580939  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgcta 217  Q
      |||   |||| |||| ||| | ||||| || ||||| |||| ||| |||| |||||| |||||||||||||||||| ||||||||||||| |||| ||    
T  37580940 ttttgtaatgatgtcacagagaagggagtgagactagtagtagaaaaatgcatacacctgagagagattaatttgcaaaattgtcgtaaagtgtctggta 37581039  T
Q  218 atatt 222  Q
    |||||    
T  37581040 atatt 37581044  T

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Target: chr3; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 18 - 209
Target Start/End: Original strand, 33714875 - 33715066
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||| |||||  ||||||||||||| |||||| |||||||||  | | | |||||||| ||||||  ||| |||| ||||| ||| || ||  |||||    
T  33714875 caaactggaggtgctgaacttgtcaaactcaagaattgatgatggcgcattgtatgcgatttcaaagagttgccctcggcttctacatctggacctggaa 33714974  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagt 209  Q
     |||| | | || |||||||| | ||||| ||||||||| |||  ||||||  |||||| |||||||||||||||||| |||||| ||||||    
T  33714975 gattgtcatcatgtcacggagaagggagtgaggctagtgttagacaactgcgtacacctgagagagattaatttgcaatattgtcctaaagt 33715066  T

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Target: chr3; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 18 - 219
Target Start/End: Original strand, 36811047 - 36811248
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||| ||||| |||||||||||  | |||||| ||||| ||  || ||| ||||| ||||||||| |||| |||| ||||| |||||||||  |||||    
T  36811047 caaactggaggtgttgaacttgtcccattcaagaattgataatagagcactgtatgcaatctcaaagatttgccctcggcttctacaacttgacctggaa 36811146  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgcta 217  Q
     ||||   | || |||| ||| | |||||  ||| |||||||| ||||||||  ||||| |||||||||||||||| |  |||||||||||| ||| |||    
T  36811147 cattgttattatgtcacagagaagggagtccggcaagtggtagaaaactgcattcacctgagagagattaatttgcgatcttgtcgtaaagtgtctacta 36811246  T
Q  218 at 219  Q
    ||    
T  36811247 at 36811248  T

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Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 18 - 218
Target Start/End: Original strand, 37587574 - 37587774
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||| ||||| |||||||||||| | |||||| |||||||| ||||| | ||||||||||||||| |||| |||  |||||  ||| | ||  || ||    
T  37587574 caaactggaggtattgaacttgtcacactcaagaattgatgataaagtattgtatgcgatctcaaagatttgcccttggcttctgcaattggacctgaaa 37587673  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgcta 217  Q
     | ||   |||| |||| ||| | ||||| |||||||  || | |||||||| |||||| |||||||||||||||| | |||||||| |||| |||||||    
T  37587674 cactgttatgatgtcacagagaagggagtgaggctagctgtggaaaactgcatacacctgagagagattaatttgcgatattgtcgtgaagtgtctgcta 37587773  T
Q  218 a 218  Q
    |    
T  37587774 a 37587774  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 145 - 219
Target Start/End: Original strand, 27005919 - 27005993
Alignment:
Q  145 gttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgctaat 219  Q
    |||||||||||||||| ||| |||| | ||||||||||||||||| ||  |  |||||||| |||||||||||||    
T  27005919 gttaggctagtggtagaaaaatgcacatacctaagagagattaatctgggatcttgtcgtagagtttctgctaat 27005993  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 216
Target Start/End: Original strand, 33708994 - 33709192
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaagttttgtcctcagcttcaacaacttgatgtggaa 117  Q
    |||||| |||||  ||||||||||| | |||||| |||||||||  | | | ||||| |||||||||  ||| |||| ||||| ||| || ||  |||||    
T  33708994 caaactggaggtgctgaacttgtcagactcaagaattgatgatggtgcattgtatgcaatctcaaagagttgccctcggcttctacatctggacctggaa 33709093  T
Q  118 aattgccgtgatatcacggaggacggagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgct 216  Q
       || | | || |||||||| | ||||| ||||||||| |||  || |||| |||||| |||||| |||||||| || ||||||||||||| ||||||    
T  33709094 ggatgtcatcatgtcacggagaagggagtgaggctagtgttagacaaatgcatacacctgagagagcttaatttggaatattgtcgtaaagtgtctgct 33709192  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 37582363 - 37582442
Alignment:
Q  143 gagttaggctagtggtagcaaactgcaaacacctaagagagattaatttgcaacattgtcgtaaagtttctgctaatatt 222  Q
    |||| ||||||||||||| |||||||| || | | ||||||||||||||||||  ||||  |||||| |||||| |||||    
T  37582363 gagtgaggctagtggtagaaaactgcatacgcttgagagagattaatttgcaatgttgttataaagtgtctgctgatatt 37582442  T

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Target: chr2 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 18 - 82
Target Start/End: Original strand, 32785792 - 32785856
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaa 82  Q
    |||||||||||| |||||||||||| |  ||||| |||||||||||| |||||||| ||||||||    
T  32785792 caaactagaggtgttgaacttgtcacatacaagaattgatgatgaagcactttatgtgatctcaa 32785856  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 84
Target Start/End: Original strand, 18724389 - 18724442
Alignment:
Q  31 ttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaag 84  Q
    |||||||||||| | |||||| |||||||| ||||||| |||||||||||||||    
T  18724389 ttgaacttgtcacactcaagaattgatgataaagtactgtatgcgatctcaaag 18724442  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 18315293 - 18315359
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaag 84  Q
    |||||| ||||| |||||||||||| |  ||| |||||||||||||| ||| |||| ||||||||||    
T  18315293 caaactggaggtgttgaacttgtcacatacaaaagttgatgatgaagcactctatgtgatctcaaag 18315359  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 84
Target Start/End: Original strand, 41901555 - 41901621
Alignment:
Q  18 caaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaag 84  Q
    |||||| ||||| |||||||||||| |  ||| |||||||||||||| |||||||  ||||||||||    
T  41901555 caaactggaggtgttgaacttgtcatatacaaaagttgatgatgaagcactttatatgatctcaaag 41901621  T

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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 19 - 84
Target Start/End: Original strand, 8184051 - 8184116
Alignment:
Q  19 aaactagaggtcttgaacttgtcaaagtcaagagttgatgatgaagtactttatgcgatctcaaag 84  Q
    ||||||||||| |||||||||||| |  ||||||||||||||  || ||| ||||| |||||||||    
T  8184051 aaactagaggtgttgaacttgtcacatacaagagttgatgatatagcactctatgcaatctcaaag 8184116  T

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