View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17015_low_28 (Length: 231)

Name: NF17015_low_28
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17015_low_28
NF17015_low_28
[»] chr5 (10 HSPs)
chr5 (17-212)||(40411418-40411609)
chr5 (17-107)||(10553737-10553826)
chr5 (17-103)||(11632686-11632771)
chr5 (17-104)||(10553438-10553524)
chr5 (17-99)||(13949805-13949886)
chr5 (17-103)||(3603460-3603545)
chr5 (17-95)||(18676939-18677016)
chr5 (22-99)||(26629516-26629592)
chr5 (66-103)||(6827952-6827989)
chr5 (17-46)||(32827897-32827926)
[»] scaffold0237 (1 HSPs)
scaffold0237 (17-103)||(20447-20532)
[»] chr8 (18 HSPs)
chr8 (17-103)||(4656077-4656162)
chr8 (17-103)||(7149035-7149120)
chr8 (17-103)||(9458508-9458593)
chr8 (17-103)||(40264275-40264360)
chr8 (17-99)||(10795379-10795460)
chr8 (20-103)||(41385870-41385952)
chr8 (17-96)||(43604382-43604460)
chr8 (17-97)||(42275945-42276024)
chr8 (17-99)||(1605804-1605885)
chr8 (17-90)||(43489921-43489992)
chr8 (17-83)||(39371185-39371250)
chr8 (63-106)||(42366943-42366986)
chr8 (66-104)||(30381821-30381859)
chr8 (66-103)||(37566521-37566558)
chr8 (17-49)||(2113789-2113821)
chr8 (65-99)||(17791617-17791651)
chr8 (73-110)||(8502633-8502670)
chr8 (79-108)||(35142036-35142065)
[»] chr7 (13 HSPs)
chr7 (17-103)||(152862-152947)
chr7 (17-103)||(12252386-12252471)
chr7 (17-103)||(30111794-30111879)
chr7 (17-103)||(33475538-33475623)
chr7 (17-103)||(47912524-47912609)
chr7 (17-103)||(43056688-43056773)
chr7 (17-90)||(35089110-35089182)
chr7 (17-100)||(27417651-27417733)
chr7 (17-108)||(12741382-12741473)
chr7 (66-103)||(39300426-39300463)
chr7 (66-103)||(46197105-46197142)
chr7 (17-103)||(34114541-34114626)
chr7 (64-96)||(47032367-47032399)
[»] chr6 (8 HSPs)
chr6 (17-103)||(3109350-3109435)
chr6 (17-103)||(29864752-29864837)
chr6 (17-103)||(6475743-6475828)
chr6 (67-103)||(10008375-10008411)
chr6 (67-102)||(35165690-35165725)
chr6 (17-55)||(7104533-7104571)
chr6 (17-55)||(8790059-8790097)
chr6 (73-102)||(5958074-5958103)
[»] chr4 (17 HSPs)
chr4 (17-103)||(42315883-42315968)
chr4 (17-103)||(7808999-7809084)
chr4 (17-103)||(7820950-7821035)
chr4 (17-96)||(8583008-8583086)
chr4 (17-105)||(42217446-42217532)
chr4 (17-98)||(3434832-3434912)
chr4 (17-106)||(56399041-56399128)
chr4 (30-104)||(44930623-44930696)
chr4 (64-103)||(47686868-47686907)
chr4 (65-103)||(28846170-28846208)
chr4 (66-103)||(388617-388654)
chr4 (66-103)||(54510609-54510646)
chr4 (66-100)||(5117866-5117900)
chr4 (17-55)||(38234612-38234650)
chr4 (67-100)||(10600643-10600676)
chr4 (78-107)||(41761974-41762003)
chr4 (75-103)||(44929876-44929904)
[»] chr3 (23 HSPs)
chr3 (17-103)||(30589846-30589931)
chr3 (20-103)||(26292564-26292646)
chr3 (17-102)||(19551153-19551238)
chr3 (17-103)||(36054010-36054095)
chr3 (17-101)||(46223308-46223391)
chr3 (17-103)||(2124705-2124790)
chr3 (17-103)||(23360578-23360663)
chr3 (17-103)||(23367418-23367503)
chr3 (17-103)||(23697972-23698058)
chr3 (17-103)||(23716427-23716513)
chr3 (17-103)||(23734883-23734969)
chr3 (17-103)||(26556868-26556953)
chr3 (17-103)||(38628820-38628905)
chr3 (17-103)||(26004848-26004934)
chr3 (17-103)||(24149837-24149922)
chr3 (17-104)||(23754546-23754634)
chr3 (25-101)||(35731864-35731939)
chr3 (17-55)||(50899493-50899531)
chr3 (66-104)||(27593996-27594034)
chr3 (65-100)||(33417113-33417148)
chr3 (64-102)||(6783189-6783227)
chr3 (66-103)||(28845679-28845716)
chr3 (68-101)||(43152081-43152114)
[»] chr2 (10 HSPs)
chr2 (17-103)||(29941890-29941975)
chr2 (17-103)||(45547916-45548001)
chr2 (17-103)||(7486957-7487042)
chr2 (17-104)||(6288555-6288641)
chr2 (34-103)||(35171381-35171449)
chr2 (64-103)||(24192663-24192702)
chr2 (67-102)||(24935292-24935327)
chr2 (67-102)||(25683985-25684020)
chr2 (66-103)||(11535723-11535760)
chr2 (17-53)||(14919805-14919841)
[»] chr1 (12 HSPs)
chr1 (17-103)||(45319476-45319561)
chr1 (17-103)||(14389423-14389508)
chr1 (17-103)||(52706389-52706474)
chr1 (17-100)||(45535758-45535840)
chr1 (17-99)||(26881820-26881901)
chr1 (17-55)||(39758884-39758922)
chr1 (17-55)||(39764238-39764276)
chr1 (66-103)||(10897691-10897728)
chr1 (66-103)||(36403133-36403170)
chr1 (17-55)||(48198956-48198994)
chr1 (17-55)||(48207539-48207577)
chr1 (66-103)||(33242461-33242498)
[»] scaffold0153 (1 HSPs)
scaffold0153 (17-103)||(33825-33910)
[»] scaffold0016 (1 HSPs)
scaffold0016 (17-103)||(80793-80878)


Alignment Details
Target: chr5 (Bit Score: 140; Significance: 2e-73; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 17 - 212
Target Start/End: Original strand, 40411418 - 40411609
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc-taaatctaaata 115  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  40411418 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttttctatcaaaacagtcttttaaaatctcaatccaatacaccccctaaatctaaata 40411517  T
Q  116 ttataatgatgaaaataataattttatactttccttccattgaaatcactactctccctttcttcgaaggaaacacatgattttaaaatctctcccc 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||||||||||||| ||||    
T  40411518 ttataatgatgaaaataataattttatactttccttccattgaaatcactactctccctt-----caaggaaacacatgattttaaaatctcgcccc 40411609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 107
Target Start/End: Original strand, 10553737 - 10553826
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccctaaa 107  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||| |||||||    
T  10553737 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacatccctaaa 10553826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 11632771 - 11632686
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  11632771 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 11632686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 10553524 - 10553438
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||| |||||||||||||||||||||||    
T  10553524 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtctttttaaatctcaatccaatacacccct 10553438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 13949886 - 13949805
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaataca 99  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  13949886 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatccaataca 13949805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 3603545 - 3603460
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||| |       ||||||||||||||||||||||| |||||| ||||| ||||    
T  3603545 atcaatacaatccaacaaagtcttttaaaatcttcaa-aaaaatttctatcaaaacagtcttttaaaatttcaatctaatacccccc 3603460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 17 - 95
Target Start/End: Complemental strand, 18677016 - 18676939
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaa 95  Q
    |||| |||||| ||||||| |||||||||||||||||||       ||||||||| |||||||||||||||||||||||    
T  18677016 atcactacaatacaacaaaatcttttaaaatcttcaagatttttt-ctatcaaaatagtcttttaaaatctcaatccaa 18676939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 22 - 99
Target Start/End: Complemental strand, 26629592 - 26629516
Alignment:
Q  22 tacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaataca 99  Q
    |||||||| ||||| ||||||||||| |||||||       | ||||||| |||||||||||||||||||||||||||    
T  26629592 tacaatcctacaaaatcttttaaaattttcaagacttttt-caatcaaaatagtcttttaaaatctcaatccaataca 26629516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 6827989 - 6827952
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| | |||||||||||||||||||||||||||||    
T  6827989 tcaaaataatcttttaaaatctcaatccaatacacccc 6827952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 17 - 46
Target Start/End: Complemental strand, 32827926 - 32827897
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaa 46  Q
    ||||||||||||||||||||||||||||||    
T  32827926 atcaatacaatccaacaaagtcttttaaaa 32827897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0237 (Bit Score: 61; Significance: 2e-26; HSPs: 1)
Name: scaffold0237
Description:

Target: scaffold0237; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 20532 - 20447
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  20532 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 20447  T

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Target: chr8 (Bit Score: 61; Significance: 2e-26; HSPs: 18)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 4656077 - 4656162
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  4656077 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 4656162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 7149035 - 7149120
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  7149035 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 7149120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 9458508 - 9458593
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  9458508 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 9458593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 40264360 - 40264275
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  40264360 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 40264275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 10795460 - 10795379
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaataca 99  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||    
T  10795460 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatccaataca 10795379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 41385952 - 41385870
Alignment:
Q  20 aatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||    
T  41385952 aatacaatccaacaaagtcttttaaaatcttcaa-aaaaatttctatcaaaacagtcttttaaaatctcaatccaatacacccc 41385870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 43604460 - 43604382
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaat 96  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  43604460 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatccaat 43604382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 97
Target Start/End: Original strand, 42275945 - 42276024
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaata 97  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||    
T  42275945 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatctaata 42276024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 1605885 - 1605804
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaataca 99  Q
    |||||||||||||  ||||||||||||||||||||||||       ||||||||||||| |||||||||||||||||||||||    
T  1605885 atcaatacaatcctgcaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtattttaaaatctcaatccaataca 1605804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 90
Target Start/End: Original strand, 43489921 - 43489992
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaa 90  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||  |||||||||||||||||    
T  43489921 atcaatacaatccaacaaagtcttttaaaatcttcaaga--tttttctatcaaaaaggtcttttaaaatctcaa 43489992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 83
Target Start/End: Complemental strand, 39371250 - 39371185
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaa 83  Q
    ||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||    
T  39371250 atcaatacaatccaacaaagtcttttaaaatcttcaa-aaaaatttctatcaaaacagtcttttaaa 39371185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 63 - 106
Target Start/End: Original strand, 42366943 - 42366986
Alignment:
Q  63 ctatcaaaacagtcttttaaaatctcaatccaatacacccctaa 106  Q
    ||||||||| |||| |||||||||||||||||||||||||||||    
T  42366943 ctatcaaaatagtcatttaaaatctcaatccaatacacccctaa 42366986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Complemental strand, 30381859 - 30381821
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  30381859 tcaaaatagtcttttaaaatctcaatccaatacacccct 30381821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 37566558 - 37566521
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  37566558 tcaaaatagtcttttaaaatctcaatccaatacacccc 37566521  T

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Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 49
Target Start/End: Original strand, 2113789 - 2113821
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatct 49  Q
    |||||||||||||||||||||||||||||||||    
T  2113789 atcaatacaatccaacaaagtcttttaaaatct 2113821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 65 - 99
Target Start/End: Original strand, 17791617 - 17791651
Alignment:
Q  65 atcaaaacagtcttttaaaatctcaatccaataca 99  Q
    ||||||| |||||||||||||||||||||||||||    
T  17791617 atcaaaatagtcttttaaaatctcaatccaataca 17791651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 110
Target Start/End: Complemental strand, 8502670 - 8502633
Alignment:
Q  73 agtcttttaaaatctcaatccaatacacccctaaatct 110  Q
    ||||||||||||||||||||||||||| |||| |||||    
T  8502670 agtcttttaaaatctcaatccaatacatcccttaatct 8502633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 79 - 108
Target Start/End: Complemental strand, 35142065 - 35142036
Alignment:
Q  79 ttaaaatctcaatccaatacacccctaaat 108  Q
    ||||||||||||||||||||||||||||||    
T  35142065 ttaaaatctcaatccaatacacccctaaat 35142036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 61; Significance: 2e-26; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 152862 - 152947
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  152862 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 152947  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 12252471 - 12252386
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||    
T  12252471 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacaatcttttaaaatctcaatccaatacacccc 12252386  T

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Target: chr7; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 30111794 - 30111879
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||    
T  30111794 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaatagtcttttaaaatctcaatccaatacacccc 30111879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 33475538 - 33475623
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||| ||||||||||    
T  33475538 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatcaaatacacccc 33475623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 47912609 - 47912524
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||| |||||    
T  47912609 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatccaatatacccc 47912524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 43056773 - 43056688
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||| ||||||||||||||||| |||||||||||    
T  43056773 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacattcttttaaaatctcaattcaatacacccc 43056688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 35089182 - 35089110
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaa 90  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||    
T  35089182 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaa 35089110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 100
Target Start/End: Complemental strand, 27417733 - 27417651
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacac 100  Q
    |||||||||||| ||||||||||||||||||||||||||       ||||||||| | ||||||||||||||||||||||||||    
T  27417733 atcaatacaatctaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaatactcttttaaaatctcaatccaatacac 27417651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 108
Target Start/End: Original strand, 12741382 - 12741473
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccctaaat 108  Q
    ||||||||||||  ||| |||||||||||||||| ||||        ||| |||| ||||||||||||||| |||||||||||||| |||||    
T  12741382 atcaatacaatctcacacagtcttttaaaatcttaaagacttttttttattaaaatagtcttttaaaatcttaatccaatacacccttaaat 12741473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 39300463 - 39300426
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  39300463 tcaaaatagtcttttaaaatctcaatccaatacacccc 39300426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 46197142 - 46197105
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||| |||||||||||||||||||||||||||||    
T  46197142 tcaaaacaatcttttaaaatctcaatccaatacacccc 46197105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 34114626 - 34114541
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||  |||||||||||||||||||| ||||       ||  ||||||||||||| |||||| ||||||||||||||||    
T  34114626 atcaatacaatcacacaaagtcttttaaaatctttaagatttttt-ctgccaaaacagtctttcaaaatcccaatccaatacacccc 34114541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 64 - 96
Target Start/End: Original strand, 47032367 - 47032399
Alignment:
Q  64 tatcaaaacagtcttttaaaatctcaatccaat 96  Q
    |||||||| ||||||||||||||||||||||||    
T  47032367 tatcaaaatagtcttttaaaatctcaatccaat 47032399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 61; Significance: 2e-26; HSPs: 8)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 3109435 - 3109350
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  3109435 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 3109350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 29864837 - 29864752
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  29864837 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 29864752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 6475828 - 6475743
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||||    
T  6475828 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaattcaatacacccc 6475743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 103
Target Start/End: Complemental strand, 10008411 - 10008375
Alignment:
Q  67 caaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||| |||||||||||||||||||||||||||||||    
T  10008411 caaaatagtcttttaaaatctcaatccaatacacccc 10008375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Original strand, 35165690 - 35165725
Alignment:
Q  67 caaaacagtcttttaaaatctcaatccaatacaccc 102  Q
    ||||| ||||||||||||||||||||||||||||||    
T  35165690 caaaatagtcttttaaaatctcaatccaatacaccc 35165725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 7104533 - 7104571
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  7104533 atcaatacaatcccacaaagtcttttaaaatcttaaaga 7104571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 8790097 - 8790059
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  8790097 atcaatacaatcccacaaagtcttttaaaatcttaaaga 8790059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 73 - 102
Target Start/End: Original strand, 5958074 - 5958103
Alignment:
Q  73 agtcttttaaaatctcaatccaatacaccc 102  Q
    ||||||||||||||||||||||||||||||    
T  5958074 agtcttttaaaatctcaatccaatacaccc 5958103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 42315883 - 42315968
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  42315883 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 42315968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 7808999 - 7809084
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||    
T  7808999 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaccagtcttttaaaatctcaatccaatacacccc 7809084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 7820950 - 7821035
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||| ||||||||||||||||||||||||||||||||    
T  7820950 atcaatacaatccaacaaagtcttttaaaatcttcaaga-atttttctatcaaatcagtcttttaaaatctcaatccaatacacccc 7821035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 96
Target Start/End: Complemental strand, 8583086 - 8583008
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaat 96  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||    
T  8583086 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaatccaat 8583008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 42217532 - 42217446
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacaccccta 105  Q
    ||||||||||||||||||||||||| |||||||||||||       |||||||||||||||||||||||||||||| ||||||||||||    
T  42217532 atcaatacaatccaacaaagtcttt-aaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatcaaatacaccccta 42217446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 98
Target Start/End: Complemental strand, 3434912 - 3434832
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatac 98  Q
    |||||||||||||||||||||||||||||||||||||||       |||| |||| ||||||||||||||||||| ||||||    
T  3434912 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctattaaaatagtcttttaaaatctcaattcaatac 3434832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 106
Target Start/End: Original strand, 56399041 - 56399128
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccctaa 106  Q
    ||||||| ||| ||||||||||||||||||||||||| |       |||||||||| |||||||||||||||||| ||||||||||||||    
T  56399041 atcaataaaattcaacaaagtcttttaaaatcttcaaaaaattt--ctatcaaaacggtcttttaaaatctcaattcaatacacccctaa 56399128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 44930623 - 44930696
Alignment:
Q  30 aacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    ||||||||||||||||||||| ||||        |||||||||||||||||||||||||||||||||||||||||    
T  44930623 aacaaagtcttttaaaatctttaagattttttt-tatcaaaacagtcttttaaaatctcaatccaatacacccct 44930696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Original strand, 47686868 - 47686907
Alignment:
Q  64 tatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  47686868 tatcaaaatagtcttttaaaatctcaatccaatacacccc 47686907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 103
Target Start/End: Complemental strand, 28846208 - 28846170
Alignment:
Q  65 atcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  28846208 atcaaaatagtcttttaaaatctcaatccaatacacccc 28846170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 388654 - 388617
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  388654 tcaaaatagtcttttaaaatctcaatccaatacacccc 388617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 54510609 - 54510646
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  54510609 tcaaaatagtcttttaaaatctcaatccaatacacccc 54510646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 66 - 100
Target Start/End: Original strand, 5117866 - 5117900
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacac 100  Q
    |||||| ||||||||||||||||||||||||||||    
T  5117866 tcaaaatagtcttttaaaatctcaatccaatacac 5117900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 38234612 - 38234650
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  38234612 atcaatacaatcccacaaagtcttttaaaatcttaaaga 38234650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 67 - 100
Target Start/End: Complemental strand, 10600676 - 10600643
Alignment:
Q  67 caaaacagtcttttaaaatctcaatccaatacac 100  Q
    |||||||||||||||||||||| |||||||||||    
T  10600676 caaaacagtcttttaaaatctcgatccaatacac 10600643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 107
Target Start/End: Complemental strand, 41762003 - 41761974
Alignment:
Q  78 tttaaaatctcaatccaatacacccctaaa 107  Q
    ||||||||||||||||||||||||||||||    
T  41762003 tttaaaatctcaatccaatacacccctaaa 41761974  T

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Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 75 - 103
Target Start/End: Complemental strand, 44929904 - 44929876
Alignment:
Q  75 tcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||    
T  44929904 tcttttaaaatctcaatccaatacacccc 44929876  T

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Target: chr3 (Bit Score: 61; Significance: 2e-26; HSPs: 23)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 30589846 - 30589931
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  30589846 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 30589931  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 20 - 103
Target Start/End: Complemental strand, 26292646 - 26292564
Alignment:
Q  20 aatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  26292646 aatacaatccaacaaagtcttttaaaatcttcaagatatttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 26292564  T

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Target: chr3; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 102
Target Start/End: Complemental strand, 19551238 - 19551153
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacaccc 102  Q
    ||||||||||||||| ||||||||||||||||||||| |       ||||||||||||||||||||||||||||||||||||||||    
T  19551238 atcaatacaatccaataaagtcttttaaaatcttcaaaaaaaaactctatcaaaacagtcttttaaaatctcaatccaatacaccc 19551153  T

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Target: chr3; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 36054095 - 36054010
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||    
T  36054095 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaatagtcttttaaaatctcaatccaatacacccc 36054010  T

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Target: chr3; HSP #5
Raw Score: 55; E-Value: 9e-23
Query Start/End: Original strand, 17 - 101
Target Start/End: Complemental strand, 46223391 - 46223308
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacc 101  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||| |||||||||    
T  46223391 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacagtcttttaaaatctcaattcaatacacc 46223308  T

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Target: chr3; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 2124790 - 2124705
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||| |||||||        ||||||||||||||||||||||||||||||||||||||||    
T  2124790 atcaatacaatccaacaaagtcttttaaaattttcaagattttttt-tatcaaaacagtcttttaaaatctcaatccaatacacccc 2124705  T

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Target: chr3; HSP #7
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23360578 - 23360663
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||    
T  23360578 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttta-tatcaaaacagtcttttagaatctcaatccaatacacccc 23360663  T

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Target: chr3; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23367418 - 23367503
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||        |||||||||||||||||| |||||||||||||||||||||    
T  23367418 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttta-tatcaaaacagtcttttagaatctcaatccaatacacccc 23367503  T

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Target: chr3; HSP #9
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23697972 - 23698058
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||| |       ||||||||||| | |||||||||||||||||||||||||||    
T  23697972 atcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacacccc 23698058  T

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Target: chr3; HSP #10
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23716427 - 23716513
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||| |       ||||||||||| | |||||||||||||||||||||||||||    
T  23716427 atcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacacccc 23716513  T

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Target: chr3; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 23734883 - 23734969
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||| |       ||||||||||| | |||||||||||||||||||||||||||    
T  23734883 atcaatacaatccaacaaagtcttttaaaatcttcaaaaataaattctatcaaaacaatgttttaaaatctcaatccaatacacccc 23734969  T

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Target: chr3; HSP #12
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 26556868 - 26556953
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||| ||||||||||||||||||||| ||||       |||||||||||||||||||||||||||||||||||||||||    
T  26556868 atcaatacaatcgaacaaagtcttttaaaatctttaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 26556953  T

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Target: chr3; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 38628905 - 38628820
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||| ||||||||||||||||||| |||||||       ||||||||| |||||||||||||||||||||||||||||||    
T  38628905 atcaatacaattcaacaaagtcttttaaaattttcaagatttttt-ctatcaaaagagtcttttaaaatctcaatccaatacacccc 38628820  T

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Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 26004934 - 26004848
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||| ||||||| ||| ||||||| || ||||       |||||||||||||||||||||||||||||||||||||||||    
T  26004934 atcaatacaattcaacaaactctcttaaaatatttaagatttttttctatcaaaacagtcttttaaaatctcaatccaatacacccc 26004848  T

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Target: chr3; HSP #15
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 24149922 - 24149837
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||| |||||||||||||| ||||||||||||||||       ||||||||| ||||||||||||||| |||||||||||||||    
T  24149922 atcaatataatccaacaaagtcatttaaaatcttcaagatttttt-ctatcaaaatagtcttttaaaatcttaatccaatacacccc 24149837  T

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Target: chr3; HSP #16
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 17 - 104
Target Start/End: Original strand, 23754546 - 23754634
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttc-aagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    ||||||||||||||||||||||||||||||||||| || |       ||||||| | | ||||||||||||||||||||||||||||||    
T  23754546 atcaatacaatccaacaaagtcttttaaaatcttcaaaaaaaaaaatctatcaacataatcttttaaaatctcaatccaatacacccct 23754634  T

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Target: chr3; HSP #17
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 101
Target Start/End: Original strand, 35731864 - 35731939
Alignment:
Q  25 aatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacc 101  Q
    |||||||||||||||||||||||||||||||       ||||||||||| ||| |||||||||||||||||||||||    
T  35731864 aatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacaatctgttaaaatctcaatccaatacacc 35731939  T

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Target: chr3; HSP #18
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 55
Target Start/End: Complemental strand, 50899531 - 50899493
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50899531 atcaatacaatccaacaaagtcttttaaaatcttcaaga 50899493  T

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Target: chr3; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 66 - 104
Target Start/End: Original strand, 27593996 - 27594034
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  27593996 tcaaaatagtcttttaaaatctcaatccaatacacccct 27594034  T

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Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 65 - 100
Target Start/End: Original strand, 33417113 - 33417148
Alignment:
Q  65 atcaaaacagtcttttaaaatctcaatccaatacac 100  Q
    ||||||| ||||||||||||||||||||||||||||    
T  33417113 atcaaaatagtcttttaaaatctcaatccaatacac 33417148  T

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Target: chr3; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 102
Target Start/End: Complemental strand, 6783227 - 6783189
Alignment:
Q  64 tatcaaaacagtcttttaaaatctcaatccaatacaccc 102  Q
    |||||||| ||||||||||||| ||||||||||||||||    
T  6783227 tatcaaaatagtcttttaaaatttcaatccaatacaccc 6783189  T

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Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 28845679 - 28845716
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||| ||||||||||||||||||    
T  28845679 tcaaaatagtcttttaaaacctcaatccaatacacccc 28845716  T

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Target: chr3; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 68 - 101
Target Start/End: Original strand, 43152081 - 43152114
Alignment:
Q  68 aaaacagtcttttaaaatctcaatccaatacacc 101  Q
    |||| |||||||||||||||||||||||||||||    
T  43152081 aaaatagtcttttaaaatctcaatccaatacacc 43152114  T

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Target: chr2 (Bit Score: 61; Significance: 2e-26; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 29941890 - 29941975
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  29941890 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 29941975  T

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Target: chr2; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 45547916 - 45548001
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  45547916 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 45548001  T

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Target: chr2; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 7487042 - 7486957
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||| ||||||||||||||||||||||||||||||    
T  7487042 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacggtcttttaaaatctcaatccaatacacccc 7486957  T

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Target: chr2; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 17 - 104
Target Start/End: Complemental strand, 6288641 - 6288555
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccct 104  Q
    |||||||||||||||||||||||||||||||||| || |       |||||||||||||||||||||||||||||||||| |||||||    
T  6288641 atcaatacaatccaacaaagtcttttaaaatctttaa-aaaaatttctatcaaaacagtcttttaaaatctcaatccaatccacccct 6288555  T

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Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 34 - 103
Target Start/End: Complemental strand, 35171449 - 35171381
Alignment:
Q  34 aagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||       ||||||||||||||||||||||||||||||||| |||||||    
T  35171449 aagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaacacacccc 35171381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 64 - 103
Target Start/End: Complemental strand, 24192702 - 24192663
Alignment:
Q  64 tatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||| |||||||||||||||||||||||||||||||    
T  24192702 tatcaaaatagtcttttaaaatctcaatccaatacacccc 24192663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 24935327 - 24935292
Alignment:
Q  67 caaaacagtcttttaaaatctcaatccaatacaccc 102  Q
    ||||| ||||||||||||||||||||||||||||||    
T  24935327 caaaatagtcttttaaaatctcaatccaatacaccc 24935292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 102
Target Start/End: Complemental strand, 25684020 - 25683985
Alignment:
Q  67 caaaacagtcttttaaaatctcaatccaatacaccc 102  Q
    ||||| ||||||||||||||||||||||||||||||    
T  25684020 caaaatagtcttttaaaatctcaatccaatacaccc 25683985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 11535723 - 11535760
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  11535723 tcaaaatagtcttttaaaatctcaattcaatacacccc 11535760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 53
Target Start/End: Complemental strand, 14919841 - 14919805
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaa 53  Q
    ||||||||||||||||||| ||||||||||| |||||    
T  14919841 atcaatacaatccaacaaaatcttttaaaattttcaa 14919805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 2e-26; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 45319476 - 45319561
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  45319476 atcaatacaatccaacaaagtcttttaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacacccc 45319561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 14389423 - 14389508
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    ||||||||||||||||||||||||||||||||||||| |       |||||||||||||||||||||||||||||||||||||||||    
T  14389423 atcaatacaatccaacaaagtcttttaaaatcttcaa-aaaaatttctatcaaaacagtcttttaaaatctcaatccaatacacccc 14389508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Original strand, 52706389 - 52706474
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||||| |||||||||||||||||||||||||||||    
T  52706389 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaacattcttttaaaatctcaatccaatacacccc 52706474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 100
Target Start/End: Original strand, 45535758 - 45535840
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacac 100  Q
    ||||||||||||||||||| |||| ||||||||||||||       ||||||||||||||||||||||||||||||||||||||    
T  45535758 atcaatacaatccaacaaaatcttctaaaatcttcaagatttttt-ctatcaaaacagtcttttaaaatctcaatccaatacac 45535840  T

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Target: chr1; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 17 - 99
Target Start/End: Complemental strand, 26881901 - 26881820
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaataca 99  Q
    |||||||||||||||||||||||| ||||||||| ||||       ||||||||| |||||||||||||||||||||||||||    
T  26881901 atcaatacaatccaacaaagtcttctaaaatctttaagatttttt-ctatcaaaatagtcttttaaaatctcaatccaataca 26881820  T

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Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 39758884 - 39758922
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39758884 atcaatacaatccaacaaagtcttttaaaatctgcaaga 39758922  T

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Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 39764238 - 39764276
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||||||||||||||||||||||| |||||    
T  39764238 atcaatacaatccaacaaagtcttttaaaatctgcaaga 39764276  T

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Target: chr1; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 10897691 - 10897728
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  10897691 tcaaaatagtcttttaaaatctcaatccaatacacccc 10897728  T

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Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 66 - 103
Target Start/End: Original strand, 36403133 - 36403170
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| |||||||||||||||||||||||||||||||    
T  36403133 tcaaaatagtcttttaaaatctcaatccaatacacccc 36403170  T

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Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 48198956 - 48198994
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  48198956 atcaatacaatcccacaaagtcttttaaaatcttaaaga 48198994  T

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Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 55
Target Start/End: Original strand, 48207539 - 48207577
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaaga 55  Q
    ||||||||||||| |||||||||||||||||||| ||||    
T  48207539 atcaatacaatcccacaaagtcttttaaaatcttaaaga 48207577  T

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Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 66 - 103
Target Start/End: Complemental strand, 33242498 - 33242461
Alignment:
Q  66 tcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||| ||||||||||||||||||| |||||||||||    
T  33242498 tcaaaatagtcttttaaaatctcaatgcaatacacccc 33242461  T

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Target: scaffold0153 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0153
Description:

Target: scaffold0153; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 33910 - 33825
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||    
T  33910 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaaaagtcttttaaaatctcaatccaatacacccc 33825  T

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Target: scaffold0016 (Bit Score: 57; Significance: 6e-24; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 17 - 103
Target Start/End: Complemental strand, 80878 - 80793
Alignment:
Q  17 atcaatacaatccaacaaagtcttttaaaatcttcaagannnnnnnctatcaaaacagtcttttaaaatctcaatccaatacacccc 103  Q
    |||||||||||||||||||||||||||||||||||||||       ||||||||| |||||||||||||||||||||||||||||||    
T  80878 atcaatacaatccaacaaagtcttttaaaatcttcaaga-ttttttctatcaaaaaagtcttttaaaatctcaatccaatacacccc 80793  T

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