View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17015_low_29 (Length: 228)
Name: NF17015_low_29
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_29 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 136; Significance: 4e-71; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 136; E-Value: 4e-71
Query Start/End: Original strand, 14 - 210
Target Start/End: Complemental strand, 44227695 - 44227505
Alignment:
| Q |
14 |
caaaggtagtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattc |
113 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
44227695 |
caaaggtagtatatatacaaacatgttttctcattccatattcattt-ccttttccacaaagaaacatcaatacaacaagtttttttccattcatcattc |
44227597 |
T |
|
| Q |
114 |
tttaattctttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataacattgtcttaaaaagaaaaataagaaaca |
210 |
Q |
| |
|
||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
44227596 |
tttcattctttcattatattcta-----cacttcatttagtttattgtttgggttcaattcataataacattgtcttaaaaagaaaaatcagaaaca |
44227505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 22 - 210
Target Start/End: Complemental strand, 44215528 - 44215344
Alignment:
| Q |
22 |
gtataaatacaaacatgttttctcattccatattcattttccttttccacaaagaaacatcaatacaacaagnnnnnnnccattcatcattctttaattc |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||| || ||||||||||||| |||| |
|
|
| T |
44215528 |
gtataaatacaaacatgttttctcattccatattca-tttcctttgccacaaagaaacatcaatacaacaag-ttttttcctttcatcattctttgattc |
44215431 |
T |
|
| Q |
122 |
tttcattatattctattctacacttcatttagtttattgtttgggttcaattcataataac---attgtcttaaaaagaaaaataagaaaca |
210 |
Q |
| |
|
|||| ||| ||||| ||||| ||||||||||| ||||| |||||||||||||||||| |||| ||| ||||||||||||||||||| |
|
|
| T |
44215430 |
tttc-----attttattcgacactccatttagtttaatgttttggttcaattcataataacagtattgccttgaaaagaaaaataagaaaca |
44215344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University