View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_3 (Length: 547)
Name: NF17015_low_3
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_3 |
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Alignment Details
Target: chr1 (Bit Score: 396; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 17 - 539
Target Start/End: Original strand, 34419179 - 34419694
Alignment:
| Q |
17 |
aaatatactcccaaatataattcagttatttattatttattcttggtttcaaatggattgaaattgctatgactgttatccagatgaataaattaataat |
116 |
Q |
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| T |
34419179 |
aaatatattcccaattacatttaacttatttactatttattcttggttttaaatggattgaaattgcaatgactgttatccagatgaataaattaat--- |
34419275 |
T |
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| Q |
117 |
ttgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttggtcttctttctgt |
216 |
Q |
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||||| ||||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34419276 |
ttgttctttgatatagtgcatttgaggctgaactagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttggtcttctttctgt |
34419375 |
T |
|
| Q |
217 |
tggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaagacagttaaatca |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
34419376 |
tggtaaagtattttcctttgttaagagagatggctccacagccacactctttctttatcagctacatgttttcctcctttaattaaagaccgttaaatca |
34419475 |
T |
|
| Q |
317 |
gtttttctttttattgatttatcatgtattagttttagacctatcacctaatttgcacacctttcttctactacttgtttacaggaaacaagaatgggct |
416 |
Q |
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| T |
34419476 |
gtatttctttttattgatttatcatgtattagttttagacctatcgcctaatttgcacacctttcttctactgctggtttacaggaaacaagaatgggct |
34419575 |
T |
|
| Q |
417 |
tttgttgccccataccatcacagaccaaggtgattcctgttacaatgtagttatgtttgtttttatttatagtacatgtttgtctccttccttaaagtat |
516 |
Q |
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| T |
34419576 |
tttgttgccccataccaccacagaccaaggtgattcctgttacaatgttattatgtttgtttttatttgtagtacatgtttgtc----tccttaaagtat |
34419671 |
T |
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| Q |
517 |
aggctgtctagggttaatctgta |
539 |
Q |
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| T |
34419672 |
aggctgtttaggattaatttgta |
34419694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 393 - 454
Target Start/End: Original strand, 34422780 - 34422841
Alignment:
| Q |
393 |
gtttacaggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
454 |
Q |
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|||| ||||||| |||||||||||| | ||||||||||||| |||||||||||||||||||| |
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| T |
34422780 |
gtttgcaggaaataagaatgggcttctattgccccataccaccacagaccaaggtgattcct |
34422841 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 118 - 230
Target Start/End: Original strand, 34422601 - 34422713
Alignment:
| Q |
118 |
tgttttttgatatagtgcatttgaagctgaattagcagatattatccctgtggtcaaaacatccattgctagcactcgccttgttggtcttctttctgtt |
217 |
Q |
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|||| ||||||| ||||||||||| ||||| ||| ||||| ||||||||||| | ||||| ||||||| | | ||||| ||||||||| |||| | || |
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| T |
34422601 |
tgttgtttgatacagtgcatttgaggctgagttatcagatgttatccctgtgattaaaacttccattggtggtactcgtattgttggtcgcctttgtatt |
34422700 |
T |
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| Q |
218 |
ggtaaagtatttt |
230 |
Q |
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|||||| |||||| |
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| T |
34422701 |
ggtaaattatttt |
34422713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 399 - 454
Target Start/End: Original strand, 24346271 - 24346326
Alignment:
| Q |
399 |
aggaaacaagaatgggcttttgttgccccataccatcacagaccaaggtgattcct |
454 |
Q |
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||||||||||||||| ||| | ||||||||||||| |||||| |||||| |||||| |
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| T |
24346271 |
aggaaacaagaatggccttctcttgccccataccaccacagatcaaggtaattcct |
24346326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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