View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_5 (Length: 506)
Name: NF17015_low_5
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_5 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 136; Significance: 1e-70; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 136; E-Value: 1e-70
Query Start/End: Original strand, 332 - 506
Target Start/End: Original strand, 12944505 - 12944680
Alignment:
| Q |
332 |
atattgatcgtctcattaaaatatgcatttctatgttgtgattagaaattcatctttatttggtggccggaattcgaactctgactcatgcatatattat |
431 |
Q |
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| T |
12944505 |
atattgatcctctcattagaatatgcatttctatgttgtgattagaaattcatttttatttggtgtccggaattcgaactctgactcatggatatattat |
12944604 |
T |
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| Q |
432 |
acaatattccgactaactgatct-aacttacgtagagatttaatcttgttactctaatcaaaggaaatactatgtt |
506 |
Q |
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| T |
12944605 |
acaatattccgaccaactgatctaaacttacgtggagatttaatcttgttactctaatcaaagaaaatactatgtt |
12944680 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 4e-67
Query Start/End: Original strand, 17 - 150
Target Start/End: Original strand, 12943813 - 12943946
Alignment:
| Q |
17 |
aaactgtgatacatggaatgtgagagattgatacctagatactaaggaaaaattaggatagaatataagtaaatttatgaatacatgagtcatgcaagaa |
116 |
Q |
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| T |
12943813 |
aaactgtgatacatggaatgtgagagattgatacctagatactaaggaaaaattaggttagaatataagtaaatttatgaatacatgagtcatgcaagaa |
12943912 |
T |
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| Q |
117 |
aggtatggatgaagattagtttattcctcctaaa |
150 |
Q |
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| T |
12943913 |
aggtatggatgaagattagtttattcctcctaaa |
12943946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 401 - 429
Target Start/End: Original strand, 12944297 - 12944325
Alignment:
| Q |
401 |
gaattcgaactctgactcatgcatatatt |
429 |
Q |
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| T |
12944297 |
gaattcgaactctgactcatgcatatatt |
12944325 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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