View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17015_low_8 (Length: 441)
Name: NF17015_low_8
Description: NF17015
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17015_low_8 |
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Alignment Details
Target: chr4 (Bit Score: 407; Significance: 0; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 1 - 427
Target Start/End: Complemental strand, 30272053 - 30271627
Alignment:
| Q |
1 |
tgatcgttataaatatcattagaaattgtgtaatcgactacttgtgctttgatgtgacctataaataggagtcatgttatttgctgctataagtacaaga |
100 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30272053 |
tgatcgttataaatatcattagcaattgtctaatcgactacttgtgctttgatgtgacctataaataggagtcatgttatttgctgctataagtacaaga |
30271954 |
T |
|
| Q |
101 |
gacaagtttcaatctttatacattcaaaagttaattagtctctactttgtaatagggtgcatagtggatataatggacaactttgaatatctaaccgagc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
30271953 |
gacaagtttcaatctttatacattcaaaagttaattagtctctactttgtaatagggtgcatagtgcatataatggacaactttgaatatgtaaccgagc |
30271854 |
T |
|
| Q |
201 |
cagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatcacaaattccaattgatgattcacaaactat |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
30271853 |
cagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatcacaaattccaattgatgattctcaaactat |
30271754 |
T |
|
| Q |
301 |
gtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtactttataagtgttgtgtttattttgccttaaaagttgcatac |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30271753 |
gtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtactttataagtgttgtgtttattttgccttaaaagttgcatac |
30271654 |
T |
|
| Q |
401 |
aataaatacgaacatgtacttttattt |
427 |
Q |
| |
|
||||||||||||||||||||||||||| |
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| T |
30271653 |
aataaatacgaacatgtacttttattt |
30271627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 9e-71
Query Start/End: Original strand, 169 - 421
Target Start/End: Complemental strand, 30304923 - 30304676
Alignment:
| Q |
169 |
tataatggacaactttgaatatctaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaa |
268 |
Q |
| |
|
||||||||||||||||||| || |||| ||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||| ||| |
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| T |
30304923 |
tataatggacaactttgaagatgtaacagagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatgttttcggatttttagaa |
30304824 |
T |
|
| Q |
269 |
tcacaaattccaattgatgattcacaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtactttataagt |
368 |
Q |
| |
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| | |||||||||| || || || ||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| || |
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| T |
30304823 |
ttagaaattccaatggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtactttatacgt |
30304727 |
T |
|
| Q |
369 |
gttgtgtttattttgccttaaaagttgcatacaataaatacgaacatgtactt |
421 |
Q |
| |
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|| |||||||||| |||| ||||| |||| ||||||||| ||||||||||| |
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|
| T |
30304726 |
gt--tgtttattttttcttacaagtttcatataataaatactaacatgtactt |
30304676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 172 - 421
Target Start/End: Original strand, 30280337 - 30280580
Alignment:
| Q |
172 |
aatggacaactttgaatatctaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatca |
271 |
Q |
| |
|
|||||||||||||||| ||||||| ||||||||||||||||||||||||| |||||| ||||||||| |||||||||||| |||||||||||| |||| | |
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| T |
30280337 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaattcttcaatacaccacccttatgttcatatg-tttcggatttttagaatta |
30280435 |
T |
|
| Q |
272 |
caaattccaattgatgattcacaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtactttataagtgtt |
371 |
Q |
| |
|
|||||||||| || || || ||||| ||||||||||||||| || |||||||||||||||||||| ||||||||||||||||||||||||| |||| |
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| T |
30280436 |
gaaattccaatggacgactctcaaacaatgtatttgttccaaaat---ttcttacctatcaatccacgcttctcctccataatggtactttatacgtgt- |
30280531 |
T |
|
| Q |
372 |
gtgtttattttgccttaaaagttgcatacaataaatacgaacatgtactt |
421 |
Q |
| |
|
|||||||||| |||| ||||| |||| ||||||||| ||||||||||| |
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|
| T |
30280532 |
-tgtttattttttcttacaagtttcatataataaatactaacatgtactt |
30280580 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 172 - 359
Target Start/End: Complemental strand, 30264957 - 30264770
Alignment:
| Q |
172 |
aatggacaactttgaatatctaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatca |
271 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||| | |
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| T |
30264957 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaatta |
30264858 |
T |
|
| Q |
272 |
caaattccaattgatgattcacaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtac |
359 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||| |||| |
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| T |
30264857 |
gaaattccaattgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
30264770 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 172 - 359
Target Start/End: Original strand, 30287231 - 30287418
Alignment:
| Q |
172 |
aatggacaactttgaatatctaaccgagccagtaagtccaagtggacaatacttcaacacaccacccctatgttcatatgttttcggatttttggaatca |
271 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||||||||||||||||||||| |||||||| || |||||||||||||||||||| ||||||||||||| | |
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| T |
30287231 |
aatggacaactttgaagatctaactgagccagtaagtccaagtggacaatatttcaacacccctcccctatgttcatatgtttttggatttttggaatta |
30287330 |
T |
|
| Q |
272 |
caaattccaattgatgattcacaaactatgtatttgttccaacatgtcttcttacctatcaatccacgtttctcctccataatggtac |
359 |
Q |
| |
|
|||||||||||||||| || ||| ||||||||||| |||||||| | |||||||||||||||||||| |||||||||||||| |||| |
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|
| T |
30287331 |
gaaattccaattgatgactctcaagctatgtatttgatccaacatttgttcttacctatcaatccacgcttctcctccataatagtac |
30287418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 240 - 357
Target Start/End: Original strand, 30219785 - 30219902
Alignment:
| Q |
240 |
tatgttcatatgttttcggatttttggaatcacaaattccaattgatgattcacaaactatgtatttgttccaacatgtcttcttacctatcaatccacg |
339 |
Q |
| |
|
|||||||||||||||| || ||| |||||| | |||||||||||||| |||||||||||| |||| | || |||||||| | |||||||||||||| |
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|
| T |
30219785 |
tatgttcatatgtttttgggtttctggaattagctattccaattgatgactcacaaactatgcctttgcttaaagatgtcttccttcctatcaatccacg |
30219884 |
T |
|
| Q |
340 |
tttctcctccataatggt |
357 |
Q |
| |
|
||||||||| || ||||| |
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|
| T |
30219885 |
tttctcctctattatggt |
30219902 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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