View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17016_high_2 (Length: 253)
Name: NF17016_high_2
Description: NF17016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17016_high_2 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 27751304 - 27751062
Alignment:
| Q |
1 |
tgtattttgtgttaacgggagcaagagttcgatttgttaggggattgagcttgttgttaattaggtcacgtatgctaattgatattctacaacctgtaaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |
|
|
| T |
27751304 |
tgtattttgtgttaacgggagcaagagttcgatttgttaggggtttgagcttgttgttaattaggccacgtatgctaattgatgttctacaacctgtaaa |
27751205 |
T |
|
| Q |
101 |
tagtctatcatttttattctgtttccattagaattagaactatttatctgttcacttttctctttgtatcatcacataacacaactactacatcttccaa |
200 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751204 |
tagtctatcatttttattctatttccattagaattagaactatttatctgttctattttctctttgtatcatcacataacacaactactacatcttccaa |
27751105 |
T |
|
| Q |
201 |
tttgcagaagacacgagaacattaaacaaagtatgatcctttg |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751104 |
tttgcagaagacacgagaacattaaacaaagtatgatcctttg |
27751062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 48
Target Start/End: Complemental strand, 12593240 - 12593193
Alignment:
| Q |
1 |
tgtattttgtgttaacgggagcaagagttcgatttgttaggggattga |
48 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
12593240 |
tgtattttgtgttaacgggagcgagagttcgatttgttaggggtttga |
12593193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University