View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17016_low_1 (Length: 375)
Name: NF17016_low_1
Description: NF17016
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17016_low_1 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 211; Significance: 1e-115; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 133 - 359
Target Start/End: Original strand, 27751364 - 27751590
Alignment:
| Q |
133 |
ttgtgcacactagaattagccattgttttatatctaaaagaaaaatgattattacgtagcacctacctccccaccatgctccaatacagtatcttccacc |
232 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27751364 |
ttgtgcacactagaattagccattgttttatagctaaaagaaaaacgattattacgtagcacctacctccccaccatgctccaatacagtatcttccaca |
27751463 |
T |
|
| Q |
233 |
acatcactaagcatctcaatcgagcggcagaaaccaaaaatgcatagtcttctgctcatatcaagtccctggaaagaggacattcaaatttttaagacag |
332 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
27751464 |
acatcactaagcatctcaatcgagcggcagaaaccaaaaatgcatagtcttctgctcatatcaagtccctggaaagaggacattcaaatttataagacag |
27751563 |
T |
|
| Q |
333 |
caaagtattactcataaaggatgttta |
359 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
27751564 |
caaagtattactcataaaggatgttta |
27751590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 27751284 - 27751367
Alignment:
| Q |
1 |
ctcccgttaacacaaaatacaggtttcattaaaatgttgtacatctcaatcaagcgagtgtagcatcaaaccaagtgggattgt |
84 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
27751284 |
ctcccgttaacacaaaatacaggtttcattaaaatgttgtgcatctcaatcgagcgagtgtagcatcaaatcaagtgggattgt |
27751367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 61 - 153
Target Start/End: Complemental strand, 27750612 - 27750520
Alignment:
| Q |
61 |
tagcatcaaaccaagtgggattgtttatttagtggtggtaaaatgttatgcatggtacacaacctatgtcacttgtgcacactagaattagcc |
153 |
Q |
| |
|
|||||||||| | |||||||||||||| ||||| ||| || || | ||||||||| | || ||||||||| |||| ||||||||||||||| |
|
|
| T |
27750612 |
tagcatcaaatctggtgggattgtttatctagtgatggaaatatatggtgcatggtaaagaatctatgtcacatgtgtacactagaattagcc |
27750520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 134 - 359
Target Start/End: Original strand, 12593295 - 12593520
Alignment:
| Q |
134 |
tgtgcacactagaattagccattgttttatatctaaaagaaaaatgattattacgtagcacctacctccccaccatgctccaatacagtatcttccacca |
233 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
12593295 |
tgtgcacactagaattagccattgttttatagctaaaagaaaaatgattattacgtagcacctacctccccaccatgctccaagacagtatcttccacca |
12593394 |
T |
|
| Q |
234 |
catcactaagcatctcaatcgagcggcagaaaccaaaaatgcatagtcttctgctcatatcaagtccctggaaagaggacattcaaatttttaagacagc |
333 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
12593395 |
catcactaagcatctcaatcgagcggcagaaaccaaaaatgcatagtcttctgctcatatcaagtccctggaaagaggacattcaaatttataagacagc |
12593494 |
T |
|
| Q |
334 |
aaagtattactcataaaggatgttta |
359 |
Q |
| |
|
|||||||||||||| ||||||||||| |
|
|
| T |
12593495 |
aaagtattactcatgaaggatgttta |
12593520 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 12593220 - 12593296
Alignment:
| Q |
1 |
ctcccgttaacacaaaatacaggtttcattaaaatgttgtacatctcaatcaagcgagtgtagcatcaaaccaagtg |
77 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| |||||| |
|
|
| T |
12593220 |
ctcccgttaacacaaaatacaggtttcattaaaatgttgcgcatctcaatcgagcgagtgtagcatcaaatcaagtg |
12593296 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 106 - 155
Target Start/End: Original strand, 30776080 - 30776129
Alignment:
| Q |
106 |
ttatgcatggtacacaacctatgtcacttgtgcacactagaattagccat |
155 |
Q |
| |
|
||||| ||||||||| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
30776080 |
ttatgtatggtacacgacctatgtcacttgtgcacgttagaattagccat |
30776129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University