View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17017_high_6 (Length: 311)

Name: NF17017_high_6
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17017_high_6
NF17017_high_6
[»] chr1 (1 HSPs)
chr1 (5-295)||(36252814-36253104)


Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 36252814 - 36253104
Alignment:
Q  5 ggcaacgcaccgggtggctctactggaacatcatccaacagttccttcaacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagac 104  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36252814 ggcaacgcaccgggtggctctactggaacatcatccaacagttccttcaacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagac 36252913  T
Q  105 tagtagcatcgctattgctctgataattttttgtgtttacatcatctgttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtc 204  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36252914 tagtagcatcgctattgctctgataattttttgagtttacatcatctgttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtc 36253013  T
Q  205 aacatcttccgccttcaacttaatgttctcaataagatcaggactttcaggaacaggtcttgaatcatcaacatccaaaacgtcatggtcc 295  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  36253014 aacatcttccgccttcaacttaatgttctcaataagatcaggactttcaggaacaggtcttgaatcatcaacatccaaaacgtcatggtcc 36253104  T

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