View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17017_low_1 (Length: 536)
Name: NF17017_low_1
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17017_low_1 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 165; Significance: 5e-88; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 165; E-Value: 5e-88
Query Start/End: Original strand, 279 - 525
Target Start/End: Original strand, 31606058 - 31606328
Alignment:
| Q |
279 |
tttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcat-----------ttttagtaagttggatcaaaa |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
31606058 |
tttgcttcaatccaatgtgtcaaaattctaagccacctacaataaatcatcatattttataatctcattttatcgtcatttttagtaagttggatcaaaa |
31606157 |
T |
|
| Q |
368 |
acatcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaata-------------ttg |
454 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |
|
|
| T |
31606158 |
acatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaacatcattttcagacctat |
31606257 |
T |
|
| Q |
455 |
ttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaacccatc |
525 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
31606258 |
ttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagtccaaccctctaacccatc |
31606328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 168 - 225
Target Start/End: Complemental strand, 42563801 - 42563744
Alignment:
| Q |
168 |
tggtacacaaatctccattgcatggccatttaactcttcaaacctatgcaaacgttag |
225 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||||||| |||||||||||||| |
|
|
| T |
42563801 |
tggtacacaaatatccattgcattaccatttaactcttcaaatatatgcaaacgttag |
42563744 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 279 - 525
Target Start/End: Complemental strand, 12633078 - 12632807
Alignment:
| Q |
279 |
tttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt-----------tagtaagttggatcaaaa |
367 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
12633078 |
tttgcttcaatctaatgtgtcaaaattctaagccacctacaataaatcatcatatttcataatctcattttatcatcatttttagtaagttggatcaaaa |
12632979 |
T |
|
| Q |
368 |
acatcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaagaaatat--------------t |
453 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || | |
|
|
| T |
12632978 |
acatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgctaaatttccctccaagaaacatcattttcagacctat |
12632879 |
T |
|
| Q |
454 |
gttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaacccatc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12632878 |
tttttcagaaacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaacccatc |
12632807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 159; Significance: 2e-84; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 280 - 525
Target Start/End: Complemental strand, 45291699 - 45291439
Alignment:
| Q |
280 |
ttgcttcaatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt-----------tagtaagttggatcaaaaa |
368 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| || |||| |||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
45291699 |
ttgcttcaatccaatgtgtcaaaattctaagccatctataatatatcatcatattttataatctcattttatcatcatttttagtaagttggatcaaaaa |
45291600 |
T |
|
| Q |
369 |
catcattttcacccacttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctcca------agaaatattgttttcaga |
462 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||| |||||||| |
|
|
| T |
45291599 |
tatcattttcacccatttttaaattatcaaaattcacttttaaccaacaaaatttaaattgcttaatttccctccaaaattcagacctat--ttttcaga |
45291502 |
T |
|
| Q |
463 |
aacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaacccatc |
525 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45291501 |
aacaaacaaaatccaatttgaaatgaggcccaacttatgctcagcccaaccctctaacccatc |
45291439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 56; Significance: 6e-23; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 25571921 - 25571984
Alignment:
| Q |
286 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
349 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
25571921 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
25571984 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 26006389 - 26006452
Alignment:
| Q |
286 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
349 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
26006389 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
26006452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 26125154 - 26125217
Alignment:
| Q |
286 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
349 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
26125154 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
26125217 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 45047748 - 45047811
Alignment:
| Q |
286 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
349 |
Q |
| |
|
||||| ||||||||||||||||||||| | |||||||||||||||||||||||||||||||||| |
|
|
| T |
45047748 |
caatctaatgtgtcaaaattctaagcctcctacaataaatcatcatattttataatctcatttt |
45047811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 286 - 349
Target Start/End: Original strand, 23362974 - 23363037
Alignment:
| Q |
286 |
caatccaatgtgtcaaaattctaagccacttacaataaatcatcatattttataatctcatttt |
349 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
23362974 |
caatccaatgtgtcaaaattctaagcctcctacaataaatcatcattttttataatctcatttt |
23363037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University