View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17017_low_2 (Length: 430)
Name: NF17017_low_2
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17017_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 1 - 425
Target Start/End: Complemental strand, 12561912 - 12561490
Alignment:
| Q |
1 |
aaaatatacaagtatttaagttctggtaagtataaaaagtatatgtatcggtacaccttaaaatctcatattgtttggaaatcaacattaaaagtagttt |
100 |
Q |
| |
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||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||||||||| |
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| T |
12561912 |
aaaatatacaagtatttaaattctggtaagtataaaaagtatatgtattggtacaccttaaaatctcatattttttggaaatca---ttaaaagtagttt |
12561816 |
T |
|
| Q |
101 |
atatacaacagtcacactcctcaatccaatgagtgtcttttataaaagacaaccgtaagggttcattcaacgatccaaaatgaacagtacttagaaacat |
200 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||||||||||||||| |
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| T |
12561815 |
atatactacagtcacactcctcaatccaatgagtgtcttttataaaagacaaccgtaagggttcattcaacgatccaacaaggacagtacttagaaacat |
12561716 |
T |
|
| Q |
201 |
attgtggcgtacttgatgatggatcgaaacaaaaataattcgaacccc-tgaatgaaaattctggaaacgccattgtatgtagctcccaatttgtataaa |
299 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
12561715 |
attgtggcttacttgatgatggatcgaaacaaaaataattcgaaccccctgaatgaaaattctggaaacgccattgtatgtagctcccaatttgtataaa |
12561616 |
T |
|
| Q |
300 |
gggtcaatcaaataaaaatttctactgccgcaagtgagtgtcaaggagcactacttcaagttaaaaacaacatatagagttccaaatttttaatttctaa |
399 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
12561615 |
gggtcaatcaaataaaaatttctactgccgcaagtgagtgtcaaggagcactacttcaagttaaaaacaacatatagagttccaaatttttaacttctaa |
12561516 |
T |
|
| Q |
400 |
aaagttgatgtttgagcggtattcat |
425 |
Q |
| |
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||| |||||||||||||||||||||| |
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| T |
12561515 |
aaatttgatgtttgagcggtattcat |
12561490 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 74; Significance: 8e-34; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 21 - 238
Target Start/End: Original strand, 45055210 - 45055432
Alignment:
| Q |
21 |
ttctggtaagtataaaaagtatatgtatcggtacaccttaaaatctca---tattgtttggaaatcaacattaaaagtagtttatatacaacagtcacac |
117 |
Q |
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||||||||| ||| ||||||||||||| | ||| || ||||||| ||| |||||||| ||| | ||| || | |||||||||||||||| |||||| |
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| T |
45055210 |
ttctggtaaatattaaaagtatatgtaccagtatactttaaaatttcacattattgtttaaaaaacgacaccaacaatagtttatatacaacaatcacac |
45055309 |
T |
|
| Q |
118 |
tcctcaatccaatgagtgtcttttataaaagacaacc--gtaagggttcattcaacgatccaaaatgaacagtacttagaaacatattgtggcgtacttg |
215 |
Q |
| |
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|| |||||||| |||| |||||||||||| ||||| || ||||||||||||||||||||||||| ||| |||||| |||| |||||||| || ||| |
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| T |
45055310 |
tcatcaatccagtgagcgtcttttataaaggacaaaattgtgagggttcattcaacgatccaaaatggacaatacttaagaacacattgtggcatatttg |
45055409 |
T |
|
| Q |
216 |
atgatggatcgaaacaaaaataa |
238 |
Q |
| |
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||| ||||||||||||||||||| |
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|
| T |
45055410 |
atggtggatcgaaacaaaaataa |
45055432 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 24 - 248
Target Start/End: Original strand, 35964724 - 35964948
Alignment:
| Q |
24 |
tggtaagtataaaaagtatatgtatcggtacaccttaaaatctcatattgtttggaaatcaacattaaaagtagtttatatacaacagtcacactcctca |
123 |
Q |
| |
|
|||||| ||||||||||||| |||||| ||||||||||||||||||||||||| |||||| || ||| |||||||| ||||| | ||| ||| |||| |
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|
| T |
35964724 |
tggtaaatataaaaagtataagtatcgatacaccttaaaatctcatattgtttaacaatcaagatcaaatttagtttatgtacaataatcatacttctca |
35964823 |
T |
|
| Q |
124 |
atccaatgagtgtcttttataa--aagacaaccgtaagggttcattcaacgatccaaaatgaacagtacttagaaacatattgtggcgtacttgatgatg |
221 |
Q |
| |
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| | |||||| |||||||| | | ||||||||| ||| || || ||||||||| |||| ||| | | |||| | |||| | ||||||||| || |
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| T |
35964824 |
accaaatgagctctttttataagttacaaaaccgtaagagtttgtt--acaatccaaaataaacaatacatcggaacacagtgtgacatacttgatggtg |
35964921 |
T |
|
| Q |
222 |
gatcgaaacaaaaataattcgaacccc |
248 |
Q |
| |
|
||||||||||||||||||| ||||||| |
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|
| T |
35964922 |
gatcgaaacaaaaataatttgaacccc |
35964948 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 64 - 119
Target Start/End: Original strand, 1334501 - 1334556
Alignment:
| Q |
64 |
tctcatattgtttggaaatcaacattaaaagtagtttatatacaacagtcacactc |
119 |
Q |
| |
|
||||| |||| ||||||||||| ||||||||||||||||| |||||| |||||||| |
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|
| T |
1334501 |
tctcacattgattggaaatcaagattaaaagtagtttataaacaacactcacactc |
1334556 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 76
Target Start/End: Original strand, 34613924 - 34613974
Alignment:
| Q |
24 |
tggtaagtataaaaagtatatgtatcggtacaccttaaaatctcatattgttt |
76 |
Q |
| |
|
|||||| |||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
34613924 |
tggtaaatataaaaagtatat--atcgatacaccttaaagtctcatattgttt |
34613974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 133
Target Start/End: Complemental strand, 25754167 - 25754058
Alignment:
| Q |
24 |
tggtaagtataaaaagtatatgtatcggtacaccttaaaatctcatattgtttggaaatcaacattaaaagtagtttatatacaacagtcacactcctca |
123 |
Q |
| |
|
|||||| ||||||||||||| ||| | ||||||||||| ||||||||| ||| ||||| | || ||| ||||||||||||||| | ||| ||| |||| |
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|
| T |
25754167 |
tggtaaatataaaaagtataaatattgatacaccttaaagtctcatattatttaaaaatcgagatcaaatgtagtttatatacaataatcatacttctca |
25754068 |
T |
|
| Q |
124 |
atccaatgag |
133 |
Q |
| |
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| |||||||| |
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|
| T |
25754067 |
acccaatgag |
25754058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 51 - 133
Target Start/End: Original strand, 31264693 - 31264774
Alignment:
| Q |
51 |
gtacaccttaaaatctcatattgtttggaaatcaacattaaaagtagtttatatacaacagtcacactcctcaatccaatgag |
133 |
Q |
| |
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||||| |||||| |||| ||||||||| ||| || ||||| |||||||||||| |||| ||||||||||||| |||||||| |
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|
| T |
31264693 |
gtacatcttaaagtctcgtattgtttgagaattaagattaagggtagtttatata-aacattcacactcctcaacccaatgag |
31264774 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000006; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 359 - 423
Target Start/End: Complemental strand, 31009068 - 31009004
Alignment:
| Q |
359 |
gttaaaaacaacatatagagttccaaatttttaatttctaaaaagttgatgtttgagcggtattc |
423 |
Q |
| |
|
|||||||||||||||| |||||||| ||| | ||||||||||| ||| || |||| || |||||| |
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|
| T |
31009068 |
gttaaaaacaacatattgagttccatattatcaatttctaaaatgttaatatttgggcagtattc |
31009004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 334 - 405
Target Start/End: Original strand, 44837092 - 44837164
Alignment:
| Q |
334 |
tgagtgtcaaggagcactacttcaa-gttaaaaacaacatatagagttccaaatttttaatttctaaaaagtt |
405 |
Q |
| |
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||||||||||||| || |||||||| |||| ||||||||| ||||||||||||||||| || ||| ||||| |
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| T |
44837092 |
tgagtgtcaaggaccaatacttcaaagttacaaacaacattctgagttccaaatttttaaattttaataagtt |
44837164 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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