View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17017_low_3 (Length: 384)
Name: NF17017_low_3
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17017_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 350; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Original strand, 3774765 - 3775131
Alignment:
| Q |
1 |
agaagagagagatccaagtgataccattgagaagaaccgaagcttttgggaaagccaacatcttggtgtgcaggtaattatttgaatttttaatactatt |
100 |
Q |
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| T |
3774765 |
agaagagagagatccaagtgataccattgagaagaaccgaagcttttgggaaagccaacatcttggtgtgcaggtaattatttgaatttttaatactatt |
3774864 |
T |
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| Q |
101 |
atatggtcatgttagtgtgattttatgtagagggacatagtagtgtaattcactttctttgcttaattgattgttccaaaattaatatgtatttaatttt |
200 |
Q |
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| T |
3774865 |
atatggtcatgt--gtgtgattttatgtagagggacatagtagtgtaattcactttctttgcttaattgattgttccaaaattaatatgtatttaatttt |
3774962 |
T |
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| Q |
201 |
ttgttggatctgatcagctagctctataatttgtgatatgtaaatcacaatcaaccttctaaataaatatgatttaaattttcttttgttccaaaagcat |
300 |
Q |
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| T |
3774963 |
ttgttggatctgatcagctagctctataatttgtgatatgtaaatcacaatcaaccttctaaataaatatgatttaaattttcttttgttccaaaagcat |
3775062 |
T |
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| Q |
301 |
tagattttggaggc-ttttgttttgatcaatcaatgggatttaattttggtgcagaccaatatatacag |
368 |
Q |
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| T |
3775063 |
tagattttggaggctttttgttttgatcaatcaatgggatttaattttggtgcagaccaatatatacag |
3775131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 3807021 - 3807069
Alignment:
| Q |
262 |
aataaatatgatttaaattttcttttgttccaaaagcattagattttgg |
310 |
Q |
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| T |
3807021 |
aataaatatgatttaaatttgcttttgttccaaaatcatttgattttgg |
3807069 |
T |
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