View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17017_low_4 (Length: 363)
Name: NF17017_low_4
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17017_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 349
Target Start/End: Complemental strand, 25011315 - 25010967
Alignment:
| Q |
1 |
ttcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatgggacaattgtaaaatgatcattagtgctaacc |
100 |
Q |
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| T |
25011315 |
ttcacacagtcagcacattagtgatggttggatcgtgattagactgtcatgagttcaaatcctatatggaacaattgtaaaatgatcattagtgctaacc |
25011216 |
T |
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| Q |
101 |
tttattaatagtaataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgctgttac |
200 |
Q |
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| T |
25011215 |
tttattaataataataatttcaaatttgtttttaaactgaaactcaccgcacctctctaaggatacttaaaaatgagcagacagaagtttacgctgttac |
25011116 |
T |
|
| Q |
201 |
catttttgctttttactagacaagtctgtttattctgcaactgactagatgatatttcatttgaatttggctcctttgtaggcgttggaaagatgtgagt |
300 |
Q |
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| T |
25011115 |
catttttgctttttactagacaagtctgtttattttgcaactgactagatgacatttcatttgaatttggctcctttgtaggcgttggaaagatgtgagt |
25011016 |
T |
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| Q |
301 |
attggcgcttgtcggatcagcagggaaaaccccctggcgttatgggatg |
349 |
Q |
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| T |
25011015 |
attggcgcttgtcggatcagcagggaaaaccccctggtgttatgggatg |
25010967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 51 - 90
Target Start/End: Complemental strand, 4752841 - 4752802
Alignment:
| Q |
51 |
gagttcaaatcctatatgggacaattgtaaaatgatcatt |
90 |
Q |
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| T |
4752841 |
gagttcaaatcctatatggaacagttgtaaaatgatcatt |
4752802 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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