View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17017_low_6 (Length: 311)
Name: NF17017_low_6
Description: NF17017
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17017_low_6 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 5 - 295
Target Start/End: Original strand, 36252814 - 36253104
Alignment:
| Q |
5 |
ggcaacgcaccgggtggctctactggaacatcatccaacagttccttcaacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagac |
104 |
Q |
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| T |
36252814 |
ggcaacgcaccgggtggctctactggaacatcatccaacagttccttcaacaatggtgagaaacaagacttcatggtttcttcaatgaagccccgtagac |
36252913 |
T |
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| Q |
105 |
tagtagcatcgctattgctctgataattttttgtgtttacatcatctgttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtc |
204 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36252914 |
tagtagcatcgctattgctctgataattttttgagtttacatcatctgttgttaacctcacacgcttgtgtgcccttttatctgtttcttcacaattgtc |
36253013 |
T |
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| Q |
205 |
aacatcttccgccttcaacttaatgttctcaataagatcaggactttcaggaacaggtcttgaatcatcaacatccaaaacgtcatggtcc |
295 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36253014 |
aacatcttccgccttcaacttaatgttctcaataagatcaggactttcaggaacaggtcttgaatcatcaacatccaaaacgtcatggtcc |
36253104 |
T |
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