View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17018_high_12 (Length: 446)

Name: NF17018_high_12
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17018_high_12
NF17018_high_12
[»] chr1 (2 HSPs)
chr1 (1-343)||(22371155-22371475)
chr1 (347-428)||(22371014-22371095)


Alignment Details
Target: chr1 (Bit Score: 231; Significance: 1e-127; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 1 - 343
Target Start/End: Complemental strand, 22371475 - 22371155
Alignment:
Q  1 acatgatgaaaatgctcaacaaccaagtagcacgataacataatttagaaatatatttcggcctcatcttgttgacaaccttctccagctcatcaaatgg 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22371475 acatgatgaaaatgctcaacaaccaagtagcacgataacagaatttagaaatatatttcggcctcatcttgttgacaaccttctccagctcatcaaatgg 22371376  T
Q  101 attggatggtatccaatagacctattagattgagcaaaaaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagatcnnnnn 200  Q
    ||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||         
T  22371375 attggatggtatccaatagacctataagattgagcaaagaataacaacgatcagacatatattcaaagctcgtatgaagcatgtaatgaaagatcaaaaa 22371276  T
Q  201 nnttgttcctttgcataaccacttgcatcattcttaccagtcaagcagtggtatgacagcaaggtttcgatgttgcgtccaaccatggcaaaaacttaaa 300  Q
      ||||||||||||||||||||||||||||| ||||||||||||||||||||||||                      |||||||||||| |||||||||    
T  22371275 aattgttcctttgcataaccacttgcatcatccttaccagtcaagcagtggtatga----------------------ccaaccatggcagaaacttaaa 22371198  T
Q  301 aaacgaacaggagtactgtatggcacagtttgaggcaccttct 343  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  22371197 aaacgaacaggagtactgtatggcacagtttgaggcaccttct 22371155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 347 - 428
Target Start/End: Complemental strand, 22371095 - 22371014
Alignment:
Q  347 tgacgttcaattactgtgaattggctcttgatactaaaaggtggttggaacgacaatgtggcgactacgtgacggtgctgac 428  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  22371095 tgacgttcaattactgtgaattggctcttgatactaaaaggtggttggaacgacaatgtggcgactacgtgacggtgctgac 22371014  T

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