View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_14 (Length: 411)
Name: NF17018_high_14
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_14 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 380; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 8 - 411
Target Start/End: Complemental strand, 44465163 - 44464760
Alignment:
| Q |
8 |
gattattctggcataagtgatagagctaaaaacttaaaaacaaagtatgatctaatgcttaaatacagagaagctaggagaggcaaacatctatgctcac |
107 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
44465163 |
gattattctggcataagtgataaagctaaaaacttaaaaacaaagtatgatctaatgcttaaatacagagaagctgggagaggcaaacatctatgctcac |
44465064 |
T |
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| Q |
108 |
actggaagaatcatataactctagtgttataggaaccacaacaagagcatttgtggtaaagccagtggaagggagctgctcctttcttttcacagtcatt |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44465063 |
actggaagaatcatataactctagtgttataggaaccacaacaagagcatttgtggtaaagccagtggaagggagctgctcctttcttttcacagtcatt |
44464964 |
T |
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| Q |
208 |
acataatataacctgcagttataaattcaattagattatatattttggaaaaacaatacaaaatcgaaggcttaatatgagacgggaactatgagaaaca |
307 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
44464963 |
acataaaataacctgcagttataaattcaattagattatatatttcggaaaaacaatacaaaatcgaaggtttaatatgagacgggaactatgagaaaca |
44464864 |
T |
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| Q |
308 |
gctgactagcctgagtttgacccgaaaactcgtcagacattttctgctcggccaatagtgcatctaacatcctaaaaaggacctgcaaggcattctgata |
407 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
44464863 |
gctgactagcctgagtttgacccgaaaactcgtcagacattttctgctcggccaatagtgcatctaacatcctaaaaaggacctgcaaggcatgctgata |
44464764 |
T |
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| Q |
408 |
gtat |
411 |
Q |
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|||| |
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| T |
44464763 |
gtat |
44464760 |
T |
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