View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_15 (Length: 391)
Name: NF17018_high_15
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_15 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 1960659 - 1960285
Alignment:
| Q |
1 |
ataaacctgcttttaatgggtgcattttgtaagaagaaaataaatnnnnnnngcttagctgcatacatgcaaccatctttccattgtttgtaaattctta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1960659 |
ataaacctgcttttaatgggtgcattttgtaagaagaaaataaataaataaagcttagctgcatatatgcaaccatctttccattgtttgtaaattctta |
1960560 |
T |
|
| Q |
101 |
aatgcttcggctttaaaaaccagtcttatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagt |
200 |
Q |
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| T |
1960559 |
gatgcttcggctttaaaaaccagtcttatctgctatcggtgtcaattgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagt |
1960460 |
T |
|
| Q |
201 |
cttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttatt |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
1960459 |
cttttccactatccctgtttattgtatggaaatcatcatacttttctttatgttgttagtaatgtaaaaatatcagaaaacatgaaaacagtgatttgtt |
1960360 |
T |
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| Q |
301 |
atatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagttaagaataatatcaaacc |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1960359 |
atatgcaatggaaacaagatgaacagacagacaaatacataagttatcaaataaagttaagaataatatcaaacc |
1960285 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 52; Significance: 1e-20; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 53 - 244
Target Start/End: Complemental strand, 5897338 - 5897143
Alignment:
| Q |
53 |
gcttagctgcatacatgcaaccatctttccattgtttgtaaattcttaaa-tg-------cttcggctttaaaaaccagtcttatctgctatcggtgtca |
144 |
Q |
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|||||||||||||||| ||||||| |||||||||||||||||| |||| || |||| ||| |||||||||||||||||||||||| ||||| |
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| T |
5897338 |
gcttagctgcatacatacaaccataggtccattgtttgtaaattcctaaaatgtaaacaacttcagctctaaaaaccagtcttatctgctatcagtgtct |
5897239 |
T |
|
| Q |
145 |
attgtatgaaaatatcatcacacttttgcgaaaattgttcataactaaaccatagtcttttccactatccctgtttattgtatggaaatcatcatacttt |
244 |
Q |
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||| |||| |||| |||| ||||| | | || |||||||||||||||||||||| ||||||||| ||| |||||||||||||||||||| |||| |
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| T |
5897238 |
attatatggaaat--catcgcacttgtat--atgttcttcataactaaaccatagtcttatccactatcggtgtctattgtatggaaatcatcatgcttt |
5897143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 329 - 362
Target Start/End: Complemental strand, 5897063 - 5897030
Alignment:
| Q |
329 |
agacaaatacataagttatcaaataaagttaaga |
362 |
Q |
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||||||||||||||| |||||||||||||||||| |
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| T |
5897063 |
agacaaatacataagctatcaaataaagttaaga |
5897030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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