View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_16 (Length: 371)
Name: NF17018_high_16
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_16 |
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Alignment Details
Target: chr6 (Bit Score: 104; Significance: 9e-52; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 55 - 166
Target Start/End: Original strand, 5676921 - 5677032
Alignment:
| Q |
55 |
atagatttgttatttctaacgattaacttgattgagttagggttttaaatcaattttagttcttttgttttacaaatcaaaacacgtgatctattgtttc |
154 |
Q |
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| T |
5676921 |
atagatttgttatttctaacgattagcttgattgagttagggttttaaatcaattttggttcttttgttttacaaatcaaaacacgtgatctattgtttc |
5677020 |
T |
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| Q |
155 |
tttcacttgaac |
166 |
Q |
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| T |
5677021 |
tttcacttgaac |
5677032 |
T |
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Target: chr6; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 268 - 354
Target Start/End: Original strand, 5677042 - 5677124
Alignment:
| Q |
268 |
agtgtcattgtttccatgtttaattttgttatttttggtaacagcacaatacatacatataacaaaagagtaaaataataaaggaag |
354 |
Q |
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| T |
5677042 |
agtgtcattgtttccatgtttaattttgttatttttggtaacagcaca----gtacatataaaaaaagagtaaaataataaaggaag |
5677124 |
T |
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