View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17018_high_18 (Length: 277)
Name: NF17018_high_18
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_18 |
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Alignment Details
Target: chr1 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 271
Target Start/End: Original strand, 30995437 - 30995703
Alignment:
| Q |
1 |
cgcccttttattaccactttttataatatttatttatcattttctgacaaaatctgcaaattnnnnnnnnngtacaatgaatatagacacacaatacact |
100 |
Q |
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| T |
30995437 |
cgcccttttattaccactttttataatatttatttatcattttctgacaaaatctgcaaattaaaaaaaaa--acaataaatatagacacacaatacacc |
30995534 |
T |
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| Q |
101 |
agtgttacaataataatatttctttttgagagtttcttagcacgccacttgtttctcatgtgtcccatgatattttagaatatacattccaaaagtgtaa |
200 |
Q |
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| T |
30995535 |
agtgttacaataataatatttctttttgagagtttcttagcacgctacttgtttctcatgtgccccatgatattttcgaatatacattccaaaagtgt-a |
30995633 |
T |
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| Q |
201 |
aaatatgttaagaaaatcctcnnnnnnncaaattttagaatttgaaaataggacatgcgacaagtttgaag |
271 |
Q |
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| T |
30995634 |
aaatatgttaagaaaatcctc-ttttttcaaattttagaatttgaaaataggacatgcgagaagtttgaag |
30995703 |
T |
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