View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17018_high_2 (Length: 674)
Name: NF17018_high_2
Description: NF17018
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17018_high_2 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 553; Significance: 0; HSPs: 11)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 553; E-Value: 0
Query Start/End: Original strand, 17 - 655
Target Start/End: Original strand, 2032579 - 2033205
Alignment:
| Q |
17 |
aggcacaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaag |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2032579 |
aggcacaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaag |
2032678 |
T |
|
| Q |
117 |
aagataccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataata |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2032679 |
aagataccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgctattcctgtcatagaccttaaagatattgataata |
2032778 |
T |
|
| Q |
217 |
aagatccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgt |
316 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
2032779 |
aagatccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggttttttccaagttgttaatcatggaatccctttgagtgt |
2032878 |
T |
|
| Q |
317 |
tcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttat |
416 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
2032879 |
tcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagaaatagcaatagatcctttgtttat |
2032978 |
T |
|
| Q |
417 |
aatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttc |
516 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
2032979 |
aatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactctcaaaccacaagagtttc |
2033078 |
T |
|
| Q |
517 |
ctgtggtatgcaggtatgtttatgggtatgtttatgcatatgtgtaaaatttatttgctccttgaaatttggttattatcatttgtagcactgaaatttc |
616 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||| |
|
|
| T |
2033079 |
ctgtggtatgca------------ggtatgtttatgcatatgtgtaaaatttatttgctccttgaaatttggtcattatcatttgtagcaccgaaatttc |
2033166 |
T |
|
| Q |
617 |
agattggatgcgcgttgagtgtctgacatgtgtttgtgt |
655 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2033167 |
agattggatgcgcgttgagtgtctaacatgtgtttgtgt |
2033205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 21 - 655
Target Start/End: Original strand, 2053830 - 2054452
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| || |||||| |
|
|
| T |
2053830 |
acaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggagttgagaaga |
2053929 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||| | ||| ||||||||||||| ||||||||| | ||||||||||||||||| |
|
|
| T |
2053930 |
taccaagcttattccatcatcaaccagacaaatatgagatagccaacaatacaagcaatgttattcctgttatagaccttgatgatattgataataaaga |
2054029 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||||||||||||| | || || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2054030 |
tccaagtattcaccaagggatagttgagaaagtcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttctt |
2054129 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataata |
420 |
Q |
| |
|
||||||||||| ||||| || || ||||||||||||||||||||||||| ||||||| || ||||| ||||||| | ||||||||| |||| |||| |
|
|
| T |
2054130 |
gaggagttgaatgatggggtgaaaaggttttatgaacaggatacagaagccaaaaaaagtttctatacaagagatatgcagagatcctttatttacaata |
2054229 |
T |
|
| Q |
421 |
gtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgt |
520 |
Q |
| |
|
| ||| |||||||||||||||| |||||||||||||||| |||||||||| ||| |||||||||||||||||||| |||||||| ||||||||||||| |
|
|
| T |
2054230 |
gcaatgttgatatttatagctctccagcactcaattggaaggatagttttggttgtaacttggctccacctgatactctcaaaccagaagagtttcctgt |
2054329 |
T |
|
| Q |
521 |
ggtatgcaggtatgtttatgggtatgtttatgcatatgtgtaaaatttatttgctccttgaaatttggttattatcatttgtagcactgaaatttcagat |
620 |
Q |
| |
|
|||||||| |||||||||||| | || ||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
2054330 |
ggtatgca------------ggtatgtttatgtacatctgtaaaatttatttgctccttgatattttgttattatcatttgtagcactgaaatttcagat |
2054417 |
T |
|
| Q |
621 |
tggatgcgcgttgagtgtctgacatgtgtttgtgt |
655 |
Q |
| |
|
|||||||||||||||||| | ||| ||||||||| |
|
|
| T |
2054418 |
tggatgcgcgttgagtgtattacacatgtttgtgt |
2054452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 314; E-Value: 1e-177
Query Start/End: Original strand, 21 - 537
Target Start/End: Original strand, 2049824 - 2050337
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2049824 |
acaaccaagcctaactttgattctatattgagtgagcgcatagcatttgatgaaacaaaagcaggtgtaaaaggacttgttgatgcaggagttaagaaga |
2049923 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
|||||| |||||||||||||||||| |||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
2049924 |
taccaaccttattccatcatcaaccagacaaatatgaggaagccaacaacacaagccatgttattcctgtcatagaccttaaagatattgataatcaaga |
2050023 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
|| |||||||| ||||| || || |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2050024 |
ccctagtattcatcaaggaattgtcgacaatatcaaggaagcatgtgaaacttggggtttttttcaggttgttaatcatggaatccctttgagtgttctt |
2050123 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataata |
420 |
Q |
| |
|
||||||||||||||||| || || |||||||||||||||| |||||||| ||||||| |||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
2050124 |
gaggagttgaaagatggggtgaaaaggttttatgaacaggctacagaagccaaaaaaagtttgtatacaagagatatgaatagatcctttgtttataata |
2050223 |
T |
|
| Q |
421 |
gtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgt |
520 |
Q |
| |
|
|||||||||||||||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||| ||||||| |||| ||||| | |
|
|
| T |
2050224 |
gtaattttgatatttatagctctccggcactcaattggagggatagttttgcgtgttacttggct---cctgatactcccaaaccagaagattttcccgc |
2050320 |
T |
|
| Q |
521 |
ggtatgcaggtatgttt |
537 |
Q |
| |
|
|| ||||||||||||| |
|
|
| T |
2050321 |
agtgtgcaggtatgttt |
2050337 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 21 - 533
Target Start/End: Original strand, 10767222 - 10767731
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
|||||||||||||||||||||||| |||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||| |||| |
|
|
| T |
10767222 |
acaaccaagcctaaccttgattctttattgaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatggaggacttaacaaga |
10767321 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
| || | ||||||||||||||||||||| ||||||||| |||| |||||| ||||||||||||||| ||||||| ||| |||||||||||| ||||| |
|
|
| T |
10767322 |
tccctaccttattccatcatcaacctgataaatatgagttagcctacaacacaagccatgttattcctatcatagatcttgcagatattgataacaaaga |
10767421 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
|||||||||||||||| || |||||||| | ||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
10767422 |
tccaagtattcaccaaaaaattgttgacaaagtgaaggaagcatgtgaaacatgggggttttttcaagttgttaatcatggaatccctttgagtgttctt |
10767521 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataata |
420 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||| |||||||| ||| ||||||| |||| |||| |
|
|
| T |
10767522 |
gaggagttgaaagatggtgttaagaggttttatgagcaggatacagaagtcaaaaaagatttgtatacaagagatagacataaatcctttatttacaata |
10767621 |
T |
|
| Q |
421 |
gtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgt |
520 |
Q |
| |
|
|||| |||||||||||||||||||||||||| ||||||||||||| ||||| |||||||||||| ||||||||| ||||||| |||| ||||||| |
|
|
| T |
10767622 |
gtaactttgatatttatagctcaccagcacttaattggagggatacttttacatgttacttggct---cctgatactcccaaaccagaagatattcctgt |
10767718 |
T |
|
| Q |
521 |
ggtatgcaggtat |
533 |
Q |
| |
|
|||||||||||| |
|
|
| T |
10767719 |
agtatgcaggtat |
10767731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 21 - 597
Target Start/End: Complemental strand, 1950949 - 1950385
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
||||||||||||||||||||||||| ||| | |||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
1950949 |
acaaccaagcctaaccttgattctacattcaatgaacgtaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatggaggagttgagaaga |
1950850 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1950849 |
taccaagtttattccatcatcaacctgacaaatatgagatagcctacaacacaagccatgttattcctgtcatagaccttaaagatattgataacaaaga |
1950750 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
|||||||||||| |||||||| |||| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
1950749 |
tccaagtattcatcaagggattgttggcaaaatcaaggaagcatgtgaaacttgggggttttttcaggttgttaatcatggaatccctttgagtgttctt |
1950650 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaag---aattgtatactagagatagcaatagatcctttgtttata |
417 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| |||| ||||||||| | ||||| | | || || || | |||||| |||| ||| ||| |||| | |
|
|
| T |
1950649 |
gaggagatgaaggatggtgtgaagaggtttcatgagatggatacagatgctaaaaaggagtacttttacacaaaagatagaaataaatcatttatttaca |
1950550 |
T |
|
| Q |
418 |
atagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcc |
517 |
Q |
| |
|
| || ||||||||| | ||||||||||||||||||||||||||||||| || | |||||||||||| ||||||||| |||||||||||| ||||| |
|
|
| T |
1950549 |
aaagcaattttgatttgtatagctcaccagcactcaattggagggatacttgtgcttgttacttggct---cctgatactcccaaaccacaagattttcc |
1950453 |
T |
|
| Q |
518 |
tgtggtatgcaggtatgtttatgggtatgtttatgcatatgtgtaaaatttatttgctccttgaaatttggttattatca |
597 |
Q |
| |
|
||| ||||||| ||||||| |||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1950452 |
tgttgtatgca------------ggtatgtatatgtatatgtgtaaaatttatttgctccttgaaatttggttattatca |
1950385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 22 - 532
Target Start/End: Original strand, 2036639 - 2037149
Alignment:
| Q |
22 |
caaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaagat |
121 |
Q |
| |
|
|||||| |||||||||||||||| || ||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
2036639 |
caaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatggaggacttaagaggat |
2036738 |
T |
|
| Q |
122 |
accaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaagat |
221 |
Q |
| |
|
||| |||||||| ||||||||||||||| |||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2036739 |
acctgagatattccattgtcaacctgacaaatacgagaaagccaacaacacaagccatgttattcctgtcatagatcttgtagatattgataataaagat |
2036838 |
T |
|
| Q |
222 |
ccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttcttg |
321 |
Q |
| |
|
||||||||| |||||||||| |||| ||| |||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
2036839 |
ccaagtatttaccaagggattgttggcaaaatcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttcttg |
2036938 |
T |
|
| Q |
322 |
aggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataatag |
421 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| || ||||||||||||||||| || ||||| ||||||| |||||||| ||| |||| ||||| |
|
|
| T |
2036939 |
aggagttgaaagatggggtgaaaaggttttatgaacaagacacagaagtcaaaaaagatttttatacaagagatatgaatagatcttttatttacaatag |
2037038 |
T |
|
| Q |
422 |
taattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgtg |
521 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||| | |||||| ||||| |||||||| |
|
|
| T |
2037039 |
caattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgatactcttaaaccagaagagattcctgtg |
2037138 |
T |
|
| Q |
522 |
gtatgcaggta |
532 |
Q |
| |
|
||||||||||| |
|
|
| T |
2037139 |
gtatgcaggta |
2037149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 270; E-Value: 1e-150
Query Start/End: Original strand, 22 - 532
Target Start/End: Original strand, 2046016 - 2046526
Alignment:
| Q |
22 |
caaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaagat |
121 |
Q |
| |
|
|||||| |||||||||||||||| || ||| ||||||||||| |||||||||||||||| ||||||| |||||||||||||||| ||||||||||| ||| |
|
|
| T |
2046016 |
caaccatgcctaaccttgattctgtaatgaatgaacgcaaagcatttgatgaaacaaaatctggtgtgaaaggacttgttgatggaggacttaagaggat |
2046115 |
T |
|
| Q |
122 |
accaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaagat |
221 |
Q |
| |
|
||| |||||||| ||||||||||||||| ||||||||||||||| ||||||||||||||||||||||| ||| ||||||||||||||||||| |
|
|
| T |
2046116 |
acctgagatattccattgtcaacctgacaaataccagaaagccaacaacacaagccatgttattcctgtcatagatcttgtagatattgataataaagat |
2046215 |
T |
|
| Q |
222 |
ccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttcttg |
321 |
Q |
| |
|
||||||||| |||||||||| |||| ||| |||||||||||||||||||| | || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
2046216 |
ccaagtatttaccaagggattgttggcaaaatcaaggaagcatgtgaaacattaggtttttttcaggttgttaatcatggaatccctttgagtgttcttg |
2046315 |
T |
|
| Q |
322 |
aggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataatag |
421 |
Q |
| |
|
|||||||||||||||| || || |||||||||||||| || ||||||||||||||||| || ||||| ||||||| |||||||| ||| |||| ||||| |
|
|
| T |
2046316 |
aggagttgaaagatggggtgaaaaggttttatgaacaagacacagaagtcaaaaaagatttttatacaagagatatgaatagatcttttatttacaatag |
2046415 |
T |
|
| Q |
422 |
taattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgtg |
521 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| |||| |||| |||||||||||||||||||||||| |||||||| ||||| |||||||| |
|
|
| T |
2046416 |
caattatgatatttatagcccaccagcactcaattggagagatacttttgcttgttacttggctccacctgatactctcaaaccagaagagattcctgtg |
2046515 |
T |
|
| Q |
522 |
gtatgcaggta |
532 |
Q |
| |
|
||||||||||| |
|
|
| T |
2046516 |
gtatgcaggta |
2046526 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 21 - 537
Target Start/End: Original strand, 2028047 - 2028560
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
||||||||||||||||||||||| | ||| | ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||| || |||||| |
|
|
| T |
2028047 |
acaaccaagcctaaccttgattccacattcaatgaacgcaaagcatttgatgaaacaaaagctggtgtaaaaggacttgttgatggaggagttgagaaga |
2028146 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||||||| |||| |||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
2028147 |
taccaagtttattccatcatcaacctgacaaatatgagatagcctacaacacaagccatgttattcctgtcatagaccttaaagatattgataacaaaga |
2028246 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
|||||||||||| |||||||| ||| ||| |||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||| |
|
|
| T |
2028247 |
tccaagtattcatcaagggattgttagcaaaatcaaggaagcatgtgaaacttgggggttttttcaggttgttaatcatggaatccctttgagtgttctt |
2028346 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataata |
420 |
Q |
| |
|
|||||| |||| |||||||| ||||||||| |||| ||| ||||| | ||||| || || ||||| |||||| || |||| ||| |||| || | |
|
|
| T |
2028347 |
gaggagatgaaggatggtgtgaagaggtttcatgagatggagacagatgctaaaaaggagttttatacaagagatttgcatggatcatttatttacaaaa |
2028446 |
T |
|
| Q |
421 |
gtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcctgt |
520 |
Q |
| |
|
| ||||||||| | ||||||||||||||||||||||||||||||| || || |||| ||||||| ||||||||| ||||||| |||| |||||||| |
|
|
| T |
2028447 |
gcaattttgatttgtatagctcaccagcactcaattggagggatacttgtacttgttccttggct---cctgatactcccaaaccagaagattttcctgt |
2028543 |
T |
|
| Q |
521 |
ggtatgcaggtatgttt |
537 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
2028544 |
tgtatgcaggtatgttt |
2028560 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 399 - 487
Target Start/End: Original strand, 2057165 - 2057253
Alignment:
| Q |
399 |
aatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctcc |
487 |
Q |
| |
|
||||||||||||||||| ||||| ||| |||||||||||||||| || ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2057165 |
aatagatcctttgtttacaatagcaatgttgatatttatagctctccggcactcaattggagggatagttttagttgttacttggctcc |
2057253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 59 - 106
Target Start/End: Original strand, 2021932 - 2021979
Alignment:
| Q |
59 |
caaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgc |
106 |
Q |
| |
|
||||| ||||||||||||||||| |||||| ||||||||||||||||| |
|
|
| T |
2021932 |
caaagcatttgatgaaacaaaagatggtgtcaaaggacttgttgatgc |
2021979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 411 - 448
Target Start/End: Original strand, 2022290 - 2022327
Alignment:
| Q |
411 |
gtttataatagtaattttgatatttatagctcaccagc |
448 |
Q |
| |
|
||||||||||||||||||||| ||||||| |||||||| |
|
|
| T |
2022290 |
gtttataatagtaattttgatctttatagttcaccagc |
2022327 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 183; Significance: 1e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 21 - 537
Target Start/End: Complemental strand, 48909210 - 48908694
Alignment:
| Q |
21 |
acaaccaagcctaaccttgattctatattgagtgaacgcaaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcaggacttaagaaga |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||| ||| ||||||||| |
|
|
| T |
48909210 |
acaaccaagcctaactttgattctatattgagtgaacgcaaagcatttgatgaaacaaaagctagtgtaaaaggatttgttgatgaaggtattaagaaga |
48909111 |
T |
|
| Q |
121 |
taccaagcttattccatcatcaacctgacaaatatgagaaagccaacaacatgagccatgttattcctgtcatagaccttaaagatattgataataaaga |
220 |
Q |
| |
|
| |||||||| |||||||||||||| |||||| |||||| |||| |||||| |||||||| ||||| ||||||||||| ||| |||||||| ||||| |
|
|
| T |
48909110 |
tcccaagctttttccatcatcaaccagacaaaaatgagatagcctacaacaattgccatgttcttcctatcatagaccttgcagacattgataacaaaga |
48909011 |
T |
|
| Q |
221 |
tccaagtattcaccaagggatagttgacaatatcaaggaagcatgtgaaacttggggnnnnnnncaagttgttaatcatggaatccctttgagtgttctt |
320 |
Q |
| |
|
||||| |||||||||| || ||||||| | || |||||||||||||| ||||| || ||||||||||||||||||||||||| ||||| |
|
|
| T |
48909010 |
tccaattattcaccaaaaaattattgacaaattgaaagaagcatgtgaaacatggggtttttttcaggttgttaatcatggaatccctttgaacattctt |
48908911 |
T |
|
| Q |
321 |
gaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactagagatagcaatagatcctttgtttataata |
420 |
Q |
| |
|
||||| |||||||||||| | ||||| ||| |||| |||||| ||||||| |||||||| |||||||| | |||| || || ||||| |||||||| |
|
|
| T |
48908910 |
gaggaattgaaagatggtattaagagatttcatgagcaggatccagaagtaaaaaaagatttgtatacaacagatccgaagggaccctttacttataata |
48908811 |
T |
|
| Q |
421 |
gtaattttgat---atttatagctcaccagcactcaattggagggatagttttatgtgttacttggctccacctgatactatcaaaccacaagagtttcc |
517 |
Q |
| |
|
||||| ||| | | | || ||||||||| |||||||||||||||| |||||| |||| ||||||| ||||||||| ||||||| |||| ||||| |
|
|
| T |
48908810 |
gtaatattggtgggttgtctaactcaccagcgctcaattggagggatacttttatttgtttcttggct---cctgatactcccaaaccagaagattttcc |
48908714 |
T |
|
| Q |
518 |
tgtggtatgcaggtatgttt |
537 |
Q |
| |
|
| | |||||||||||||||| |
|
|
| T |
48908713 |
tctagtatgcaggtatgttt |
48908694 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 292 - 481
Target Start/End: Complemental strand, 28713521 - 28713332
Alignment:
| Q |
292 |
ttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgtatactag |
391 |
Q |
| |
|
|||||||||| || ||||||| ||||||||| || |||||||||| || ||||| || | |||||| ||||| ||||| || ||||| |||||||||| |
|
|
| T |
28713521 |
ttaatcatggtattcctttgaatgttcttgaagatatgaaagatggagtgaagagattctttgaacaagatactgaagtgaagaaagagatgtatactag |
28713422 |
T |
|
| Q |
392 |
agatagcaatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttactt |
481 |
Q |
| |
|
|||| | | || | || ||||||||||| ||||||||| | ||||| ||||||||||| ||||||||||||| |||||| ||| |||| |
|
|
| T |
28713421 |
agatcgaacaaggccattggtttataatagcaattttgatttgtatagatcaccagcacttaattggagggatacttttatatgtgactt |
28713332 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 481
Target Start/End: Complemental strand, 28736802 - 28736606
Alignment:
| Q |
285 |
caagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgt |
384 |
Q |
| |
|
||||| ||||||||||| || ||| | | |||||||||||| |||||||||| || | || || | |||||| |||| ||||| || ||||| ||| |
|
|
| T |
28736802 |
caagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatattgaagtgaagaaagagatgt |
28736703 |
T |
|
| Q |
385 |
atactagagatagcaatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttactt |
481 |
Q |
| |
|
||||||||||| | || | || ||||||||||||||||||||| | ||||| ||||||||||| ||||||||||||| |||||| ||| |||| |
|
|
| T |
28736702 |
atactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcacttaattggagggatacttttatatgtgactt |
28736606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 285 - 465
Target Start/End: Complemental strand, 28743428 - 28743248
Alignment:
| Q |
285 |
caagttgttaatcatggaatccctttgagtgttcttgaggagttgaaagatggtgtcaagaggttttatgaacaggatacagaagtcaaaaaagaattgt |
384 |
Q |
| |
|
||||| ||||||||||| || ||| | | |||||||||||| |||||||||| || | || || | |||||| ||||| ||||| || ||||| ||| |
|
|
| T |
28743428 |
caagtggttaatcatggtattcctataaatgttcttgaggatatgaaagatggagtgattagattctttgaacaagatactgaagtgaagaaagagatgt |
28743329 |
T |
|
| Q |
385 |
atactagagatagcaatagatcctttgtttataatagtaattttgatatttatagctcaccagcactcaattggagggata |
465 |
Q |
| |
|
||||||||||| | || | || ||||||||||||||||||||| | ||||| |||||||| || ||||||||||||| |
|
|
| T |
28743328 |
atactagagatcaaacaaggccattggtttataatagtaattttgatttgtatagttcaccagcgcttaattggagggata |
28743248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 417 - 487
Target Start/End: Complemental strand, 28786225 - 28786155
Alignment:
| Q |
417 |
aatagtaattttgatatttatagctcaccagcactcaattggagggatagttttatgtgttacttggctcc |
487 |
Q |
| |
|
||||| |||||| || ||||||| ||| ||||||||||||||||||||| |||| |||||| ||||||||| |
|
|
| T |
28786225 |
aatagcaattttaatctttatagttcatcagcactcaattggagggatacttttgtgtgttccttggctcc |
28786155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 28713760 - 28713715
Alignment:
| Q |
59 |
caaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgat |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
28713760 |
caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat |
28713715 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 28743660 - 28743615
Alignment:
| Q |
59 |
caaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgat |
104 |
Q |
| |
|
||||| |||||||||||||||||||||||| ||||| ||||||||| |
|
|
| T |
28743660 |
caaagcatttgatgaaacaaaagctggtgttaaaggccttgttgat |
28743615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 59 - 104
Target Start/End: Complemental strand, 28737034 - 28736989
Alignment:
| Q |
59 |
caaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgat |
104 |
Q |
| |
|
||||| ||||||||||| |||||||||||| ||||| ||||||||| |
|
|
| T |
28737034 |
caaagcatttgatgaaagaaaagctggtgttaaaggccttgttgat |
28736989 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 66 - 109
Target Start/End: Complemental strand, 16419810 - 16419767
Alignment:
| Q |
66 |
tttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
16419810 |
tttgatgaaacaaaatttggtgtaaaaggacttgttgatgcagg |
16419767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 109
Target Start/End: Complemental strand, 16443150 - 16443101
Alignment:
| Q |
60 |
aaagaatttgatgaaacaaaagctggtgtaaaaggacttgttgatgcagg |
109 |
Q |
| |
|
||||| ||||||||||||||| |||||| |||||||||||||||||||| |
|
|
| T |
16443150 |
aaagattttgatgaaacaaaacttggtgttaaaggacttgttgatgcagg |
16443101 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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